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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/CAKE_export.R
\name{CAKE_export}
\alias{CAKE_export}
\title{Export a list of datasets format to a CAKE study file}
\usage{
CAKE_export(
ds,
map = c(parent = "Parent"),
links = NA,
filename = "CAKE_export.csf",
path = ".",
overwrite = FALSE,
study = "Codlemone aerobic soil degradation",
description = "",
time_unit = "days",
res_unit = "\% AR",
comment = "Created using mkin::CAKE_export",
date = Sys.Date(),
optimiser = "IRLS"
)
}
\arguments{
\item{ds}{A named list of datasets in long format as compatible with
\code{\link{mkinfit}}.}
\item{map}{A character vector with CAKE compartment names (Parent, A1, ...),
named with the names used in the list of datasets.}
\item{links}{An optional character vector of target compartments, named with
the names of the source compartments. In order to make this easier, the
names are used as in the datasets supplied.}
\item{filename}{Where to write the result. Should end in .csf in order to be
compatible with CAKE.}
\item{path}{An optional path to the output file.}
\item{overwrite}{If TRUE, existing files are overwritten.}
\item{study}{The name of the study.}
\item{description}{An optional description.}
\item{time_unit}{The time unit for the residue data.}
\item{res_unit}{The unit used for the residues.}
\item{comment}{An optional comment.}
\item{date}{The date of file creation.}
\item{optimiser}{Can be OLS or IRLS.}
}
\value{
The function is called for its side effect.
}
\description{
In addition to the datasets, the pathways in the degradation model can be
specified as well.
}
\author{
Johannes Ranke
}
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