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ℹ Loading mkin
Loading required package: parallel
ℹ Testing mkin
✔ | OK F W S | Context
✔ | 5 | AIC calculation
✔ | 5 | Analytical solutions for coupled models [3.2 s]
✔ | 5 | Calculation of Akaike weights
✔ | 2 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.3 s]
✔ | 14 | Error model fitting [4.3 s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7 s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ | 1 | Fitting the logistic model [0.2 s]
✔ | 5 | Nonlinear mixed-effects models [0.1 s]
✔ | 2 | Test dataset classes mkinds and mkindsg
✔ | 10 | Special cases of mkinfit calls [0.3 s]
✔ | 1 | mkinfit features [0.3 s]
✔ | 8 | mkinmod model generation and printing [0.2 s]
✔ | 3 | Model predictions with mkinpredict [0.3 s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7 s]
✖ | 7 1 | Nonlinear mixed-effects models [1.9 s]
────────────────────────────────────────────────────────────────────────────────
Error (test_nlme.R:116:3): nlme_function works correctly in other cases
Error: unused argument ("sysname")
Backtrace:
1. mkin::mmkin("SFO", ds_me_sfo_5, quiet = TRUE) test_nlme.R:116:2
2. parallel::mclapply(...) /home/jranke/git/mkin/R/mmkin.R:118:4
────────────────────────────────────────────────────────────────────────────────
✖ | 10 4 | Plotting [1.7 s]
────────────────────────────────────────────────────────────────────────────────
Failure (test_plot.R:20:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Figures don't match: mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg
Failure (test_plot.R:21:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Figures don't match: plot-res-for-focus-c.svg
Failure (test_plot.R:22:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Figures don't match: mkinfit-plot-for-focus-c-with-sep-true.svg
Failure (test_plot.R:30:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Figures don't match: plot-res-for-focus-d.svg
────────────────────────────────────────────────────────────────────────────────
✔ | 4 | Residuals extracted from mkinfit models
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s]
✔ | 7 | Fitting the SFORB model [3.6 s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 4 | Summary [0.1 s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s]
✔ | 9 | Hypothesis tests [8.1 s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
══ Results ═════════════════════════════════════════════════════════════════════
Duration: 35.2 s
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 168 ]
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