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Loading mkin
Loading required package: parallel
Testing mkin
✔ | OK F W S | Context
✔ | 5 | AIC calculation
✔ | 2 | Export dataset for reading into CAKE
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s]
✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s]
✔ | 7 | Fitting the SFORB model [3.4 s]
✔ | 5 | Analytical solutions for coupled models [3.1 s]
✔ | 5 | Calculation of Akaike weights
✔ | 14 | Confidence intervals and p-values [1.2 s]
✔ | 14 | Error model fitting [5.8 s]
✔ | 5 | Time step normalisation
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ | 1 | Fitting the logistic model [0.2 s]
✔ | 5 3 | Nonlinear mixed-effects models [0.1 s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:4:3): Parent fits using saemix are correctly implemented
Reason: !saemix_available is TRUE
Skip (test_mixed.R:94:3): Print methods work
Reason: !saemix_available is TRUE
Skip (test_mixed.R:118:3): saem results are reproducible for biphasic fits
Reason: !saemix_available is TRUE
────────────────────────────────────────────────────────────────────────────────
✔ | 2 | Test dataset classes mkinds and mkindsg
✔ | 1 | mkinfit features [0.3 s]
✔ | 10 | Special cases of mkinfit calls [0.3 s]
✔ | 8 | mkinmod model generation and printing [0.2 s]
✔ | 3 | Model predictions with mkinpredict [0.3 s]
✔ | 14 2 | Evaluations according to 2015 NAFTA guidance [2.2 s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_nafta.R:25:5): Test data from Appendix B are correctly evaluated
Reason: getRversion() >= "4.1.0" is TRUE
Skip (test_nafta.R:53:5): Test data from Appendix D are correctly evaluated
Reason: getRversion() >= "4.1.0" is TRUE
────────────────────────────────────────────────────────────────────────────────
✔ | 9 | Nonlinear mixed-effects models [7.9 s]
✔ | 0 1 | Plotting [0.7 s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_plot.R:18:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
Reason: getRversion() >= "4.1.0" is TRUE
────────────────────────────────────────────────────────────────────────────────
✔ | 4 | Residuals extracted from mkinfit models
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4 s]
✔ | 4 | Summary [0.1 s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s]
✔ | 9 | Hypothesis tests [7.7 s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.0 s]
══ Results ═════════════════════════════════════════════════════════════════════
Duration: 41.2 s
── Skipped tests ──────────────────────────────────────────────────────────────
● !saemix_available is TRUE (3)
● getRversion() >= "4.1.0" is TRUE (3)
[ FAIL 0 | WARN 0 | SKIP 6 | PASS 160 ]
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