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# Copyright (C) 2019 Johannes Ranke
# Contact: jranke@uni-bremen.de
# This file is part of the R package mkin
# mkin is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
# Foundation, either version 3 of the License, or (at your option) any later
# version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
# You should have received a copy of the GNU General Public License along with
# this program. If not, see <http://www.gnu.org/licenses/>
context("Export dataset for reading into CAKE")
test_that("Exporting is reproducible", {
CAKE_export(list("FOCUS C" = FOCUS_2006_C,
"FOCUS D" = FOCUS_2006_D),
map = c(parent = "Parent", m1 = "M1"),
filename = "FOCUS_2006_D.csf", overwrite = TRUE,
study = "FOCUS 2006 D")
csf <- readLines(con = "FOCUS_2006_D.csf")
expect_known_output(csf, "FOCUS_2006_D.txt")
})
test_that("Test data from Appendix D are correctly evaluated", {
expect_message(res <- nafta(MRID_555555, "MRID 555555"))
# From Figure D.1
dtx_sop <- matrix(c(407, 541, 429, 1352, 5192066, 2383), nrow = 3, ncol = 2)
expect_equivalent(res$distimes[, 1:2], dtx_sop, tolerance = 1,
scale = 1)
C0_sop <- c(SFO = 83.8, IORE = 96.9, DFOP = 97.6)
C0_mkin <- sapply(res$parameters, function(x) x["parent_0", "Estimate"])
expect_equivalent(C0_mkin, C0_sop, scale = 1, tolerance = 0.1)
expect_equal(round(res$S_c), 717)
expect_equal(signif(res$S[["SFO"]], 3), 1.38e+3)
expect_equal(round(res$t_rep), 841)
expect_known_output(print(res), "print_nafta_analysis.txt")
plot_nafta <- function() plot(res)
vdiffr::expect_doppelganger("Plot NAFTA analysis", plot_nafta)
})
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