1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
|
context("Plotting")
test_that("Plotting mkinfit and mmkin objects is reproducible", {
skip_on_cran()
plot_default_FOCUS_C_SFO <- function() plot(fits[["SFO", "FOCUS_C"]])
plot_res_FOCUS_C_SFO <- function() plot(fits[["SFO", "FOCUS_C"]], show_residuals = TRUE)
plot_res_FOCUS_C_SFO_2 <- function() plot_res(fits[["SFO", "FOCUS_C"]])
plot_sep_FOCUS_C_SFO <- function() plot_sep(fits[["SFO", "FOCUS_C"]])
mkinparplot_FOCUS_C_SFO <- function() mkinparplot(fits[["SFO", "FOCUS_C"]])
mkinerrplot_FOCUS_C_SFO <- function() mkinerrplot(fits[["SFO", "FOCUS_C"]])
mmkin_FOCUS_C <- function() plot(fits[, "FOCUS_C"])
mmkin_SFO <- function() plot(fits["SFO",])
fit_D_obs_eigen <- suppressWarnings(mkinfit(SFO_SFO, FOCUS_2006_D, error_model = "obs", quiet = TRUE))
fit_C_tc <- mkinfit("SFO", FOCUS_2006_C, error_model = "tc", quiet = TRUE)
plot_errmod_fit_C_tc <- function() plot_err(fit_C_tc)
skip_if(getRversion() >= "4.1.0")
vdiffr::expect_doppelganger("mkinfit plot for FOCUS C with defaults", plot_default_FOCUS_C_SFO)
vdiffr::expect_doppelganger("mkinfit plot for FOCUS C with residuals like in gmkin", plot_res_FOCUS_C_SFO)
vdiffr::expect_doppelganger("plot_res for FOCUS C", plot_res_FOCUS_C_SFO_2)
vdiffr::expect_doppelganger("mkinfit plot for FOCUS C with sep = TRUE", plot_sep_FOCUS_C_SFO)
vdiffr::expect_doppelganger("mkinparplot for FOCUS C SFO", mkinparplot_FOCUS_C_SFO)
vdiffr::expect_doppelganger("mkinerrplot for FOCUS C SFO", mkinerrplot_FOCUS_C_SFO)
vdiffr::expect_doppelganger("mmkin plot for FOCUS C", mmkin_FOCUS_C)
vdiffr::expect_doppelganger("mmkin plot for SFO (FOCUS C and D)", mmkin_SFO)
vdiffr::expect_doppelganger("plot_errmod with FOCUS C tc", plot_errmod_fit_C_tc)
plot_res_sfo_sfo <- function() plot_res(f_sfo_sfo_desolve)
vdiffr::expect_doppelganger("plot_res for FOCUS D", plot_res_sfo_sfo)
plot_err_sfo_sfo <- function() plot_err(f_sfo_sfo_desolve)
vdiffr::expect_doppelganger("plot_err for FOCUS D", plot_err_sfo_sfo)
plot_errmod_fit_tc_1 <- function() plot_err(fit_tc_1, sep_obs = FALSE)
vdiffr::expect_doppelganger("plot_errmod with SFO_lin_a_tc", plot_errmod_fit_tc_1)
plot_errmod_fit_obs_1 <- function() plot_err(fit_obs_1, sep_obs = FALSE)
vdiffr::expect_doppelganger("plot_errmod with SFO_lin_a_obs", plot_errmod_fit_obs_1)
skip_on_travis()
# Biphasic fits with lots of data and fits have lots of potential for differences
plot_biphasic_mmkin <- function() plot(mixed(mmkin_biphasic))
plot_biphasic_nlme <- function() plot(nlme_biphasic)
plot_biphasic_saem_s <- function() plot(saem_biphasic_s)
plot_biphasic_saem_m <- function() plot(saem_biphasic_m)
vdiffr::expect_doppelganger("mixed model fit for mmkin object", plot_biphasic_mmkin)
vdiffr::expect_doppelganger("mixed model fit for nlme object", plot_biphasic_nlme)
vdiffr::expect_doppelganger("mixed model fit for saem object with saemix transformations", plot_biphasic_saem_s)
vdiffr::expect_doppelganger("mixed model fit for saem object with mkin transformations", plot_biphasic_saem_m)
# different results when working with eigenvalues
plot_errmod_fit_D_obs_eigen <- function() plot_err(fit_D_obs_eigen, sep_obs = FALSE)
vdiffr::expect_doppelganger("plot_errmod with FOCUS D obs eigen", plot_errmod_fit_D_obs_eigen)
})
|
