1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
|
context("Hypothesis tests")
test_that("The likelihood ratio test works", {
expect_error(lrtest(fit_tc_1, f_tc_2), "not been fitted to the same data")
res <- lrtest(fit_nw_1, fit_tc_1)
expect_equal(res[["2", "Pr(>Chisq)"]], 0.9999998)
})
test_that("We can conveniently fix parameters using 'fixed_parms'", {
f_k2_fixed <- mkinfit("DFOP", FOCUS_2006_C, fixed_parms = c(k2 = 0.05), quiet = TRUE)
expect_equivalent(f_k2_fixed$bparms.ode["k2"], 0.05)
})
test_that("Updating fitted models works", {
f_dfop_const <- mkinfit("DFOP", FOCUS_2006_C, quiet = TRUE)
f_dfop_tc <- update(f_dfop_const, error_model = "tc")
f_soil_1_nw <- update(f_soil_1_tc, error_model = "const")
f_soil_1_nw_A2 <- update(f_soil_1_nw, fixed_parms = c(k_A2 = 0))
test_nw_tc <- lrtest(f_soil_1_nw, f_soil_1_tc)
expect_equivalent(test_nw_tc[["2", "Pr(>Chisq)"]], 2.113e-6)
test_nw_A2 <- lrtest(f_soil_1_nw, f_soil_1_nw_A2)
expect_equivalent(test_nw_A2[["2", "Pr(>Chisq)"]], 0.9999468)
})
|
