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diff --git a/ChangeLog b/ChangeLog new file mode 100644 index 0000000..fdd1006 --- /dev/null +++ b/ChangeLog @@ -0,0 +1,392 @@ +commit 0d958ab6f84b569b5437f231c56004890c4ae23b +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-09-27 17:50:34 +0200 + + Make the chents package optional + +commit 399383adcdb37c4a3e32f1a2133a2fa3663618d0 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-09-23 18:23:00 +0200 + + Keep the graph for the markdown file + + The markdown file is not self-contained as the html file... + +commit 9fb69b042924045df90119e47ad4dc666dbc8b4d +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-09-23 18:16:51 +0200 + + Slightly update the README + +commit 2f618da8cfbeb0379f4d38af6f608a69c6d54bd5 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-07-30 11:29:09 +0200 + + Update static documentation + +commit 3b8730a58f7846b5261922ec90e582e0158a54c7 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-07-30 11:09:47 +0200 + + Add 'methods' to dependecies + +commit 3260b0e875b7af24f2aef7bc2464418525a192df +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-07-30 11:08:05 +0200 + + Fix the TOXSWA reading test + + Since a recent commit we are reading the concentrations at the end + of each hour, so the test needed to be updated accordingly + +commit b8f953d04e4094c79b4f860d99f3c1466ed3ad6a +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-07-30 11:06:53 +0200 + + Import 'is' from methods + +commit 1ceb226d999d56276c9e361f359368287a0749c4 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-07-30 10:42:48 +0200 + + Read cwas from .out files with metabolites + + TOXSWA 4 stores the detailed output for SWASH runs with metabolites + in its .out files. With this commit it is possible to read in + .out files from such runs with metabolites. Default is to read in + the concentrations for the parent, a newly gained "substance" argument + makes it possible to specify the metabolite for which the data should + be read. + +commit d6b230cd1b415a112009227bc9e0ff50316c42f7 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-07-15 15:05:22 +0200 + + Fix calculation of t_firstjan + + There is an inconsistency in (some?) output files, so the first + datetime needs to be fixed before reading it into a data frame + +commit b45c9bfae9e5578dd455ed417363b4996cffd46a +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-06-08 08:36:48 +0200 + + Clean up remainders of NL drift calculation function + +commit 234a20018fe9fe9824bcfaae2c391e59d09f9871 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-06-08 08:29:39 +0200 + + Use the concentration at the end of the hour + + This is also what TOXSWA presents in the summary files + +commit 4284c57c7d53a9aef0c917a050ccf2ab779cfce3 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-06-08 08:29:39 +0200 + + Use the concentration at the end of the hour + + This is also what TOXSWA presents in the summary files + +commit 057d53d0faed7b297bbb99de8cd4bf3e3e448538 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-03-10 05:28:03 +0100 + + Merge the NL drift calculations based on percentages into PEC_sw_drift + +commit 527d927371083e784ad583a6b3c7465c49a53cdc +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-03-10 05:17:45 +0100 + + Add NL specific drift calculations + +commit 1ab6d4c9f186fb7ea9bb8b968e47a9f1eab64583 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-03-02 17:51:21 +0100 + + Fix the name of the Chateadun scenario + +commit d14923ae1ac023c8f8f5ae8b5c0884f4247f764b +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2016-02-04 18:06:15 +0100 + + Test reading .out files and close connections + +commit 98a706373107188496a1df295697e739e51d6b06 +Author: Johannes Ranke <johannes.ranke@jrwb.de> +Date: 2016-02-04 17:45:02 +0100 + + Improve reading spead for new TOXSWA format + +commit 057ba40426d49e09c06db26fb7d4072741b4cb8d +Author: Johannes Ranke <johannes.ranke@jrwb.de> +Date: 2016-02-04 12:21:02 +0100 + + Read cwa data from TOXSWA 4.4.2 .out files + +commit e7f8a0e82b24d28b74681dafc97f1cf8a4662b51 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-12-27 12:30:20 +0100 + + Fix rounding of endpoint retrieval functions + +commit f9373e361dde232b08fe7431e85bf367a1cfc269 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-12-27 12:29:37 +0100 + + Another useless variant to avoid warnings in staticdoc plots + +commit 3a579d87820ccbec514f1be5eb090e874fd87eec +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-12-22 19:32:54 +0100 + + EFSA 2015 tier 1 PEC soil, clean up, add static docs + +commit 9851a97ec915ddbfc8357f1a7e2cabae56c89f7d +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-12-18 14:45:24 +0100 + + Documentation fixes, chents is currently a hard dependency + +commit 6b4e342b240baaf18150360986d15895fc80a937 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-10-15 14:41:26 +0200 + + Add endpoint and GUS functions, roxygenize + +commit c43b4947007b3c26bc56260499af51c41b8cd702 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-10-01 14:42:14 +0200 + + Add some soil data for FOCUS groundwater scenarios + +commit 697e0554bf89a63f23b9ab5548e31f218bc483e9 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-09-11 10:07:53 +0200 + + Added PEC soil for products as defined in chents v0.1-2 + +commit 634d4a0a93882a3b2d3961abbdd33694fd93dcc6 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-09-10 16:18:17 +0200 + + Add PEC soil for product with serveral ais + +commit 1ec3ee4a03d4e47fdd3be1bcbe754e478353410b +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-08-22 12:10:06 +0200 + + Updates of DESCRIPTION and NAMESPACE + +commit 51aa1a77c9b9b9a6becdb2a5a85213946719b051 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-08-22 12:06:37 +0200 + + Add README.html for cgit on jrwb.de + +commit 83c8575e2abde12208584b9c80935d4a873689fd +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-08-22 12:01:57 +0200 + + Small documentation updates + +commit 5038ba57fef6cc386566ec30f3d5dd67e62decff +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-08-21 15:10:42 +0200 + + Adapt the description to R CMD check requirements + +commit 4477e69b46e88c196f354463190753650157ea0d +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-08-21 15:01:10 +0200 + + Updates to pass checks and tests + +commit ad4cd5d9a1f8c3976d08048a441129b1fb49a62b +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-07-02 16:05:59 +0200 + + Changes to pass R CMD check --as-cran, roxygen run + +commit fef0bb7fe916f91dcff089c17aa3290c0ea1ab1f +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-12 02:19:38 +0200 + + Add sediment PEC calculations using the percentage method + +commit 5b32c30549bfa3cb42ffde7e13f75608b98c79c2 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-12 02:19:01 +0200 + + Make UK drainage with non-SFO soil degradation work + +commit 9b8e5cb80ba4a89578d979bee134f8342ca0a527 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 17:38:01 +0200 + + Now we pass R CMD check + +commit dd803b191062925eda830543236836e7822fd884 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 16:57:43 +0200 + + Add UK tier 1 drainage PEC calculations + +commit 09cf970942706cfab43753d298b42e8d85216d80 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 15:25:22 +0200 + + Now there is enough content to warrant 0.2-x + +commit 3aa5fb86772c28402047c7ebd07841061dbcdbba +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 15:23:22 +0200 + + Add facilities to calculate decline curves + +commit d3daa7b73fa5d0508ff51a843247d126c2a11691 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 13:17:13 +0200 + + Generate README.md with current pfm version + +commit cb0d72e2c2d431bd32ffb129b62ea1a522cbdfeb +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 13:09:10 +0200 + + Rename PEC_sw_drift() to PEC_sw_drift_ini() + +commit ea9b75183bcf41fcdd6f61ec6060e94c4bc321a2 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 12:13:47 +0200 + + Add simple drift PEC ini calculations + + These are tested for field crops with the CRD spreadsheet + +commit cbba81d73faa83c63a33afc61be5efc1964925bb +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 12:12:40 +0200 + + Use devtools for roxygenizing, improve logging + +commit 6e4a152925011528c21937f12bc53042a53f72de +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 10:13:18 +0200 + + JKI drift percentage data for field crops and pome/stone fruit + +commit 53099978c971ee8e5c94e67bf972f51629d67fd3 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 10:04:22 +0200 + + and the incomplete documentation + +commit 372ab2f2f59f0baaee759ce966a705f9f754cf6d +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 10:03:32 +0200 + + Intermediate stage for pfm_chent + +commit 586b248f5d249f4ebaad2175c9f78fcae8646636 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-06-11 09:54:57 +0200 + + Formatting + +commit fd1609aafd2f40266c1e29d8dfdf5e08e8838d35 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-05-24 03:52:28 +0200 + + Start of a pfm_chent data object + +commit e2b1d510e921f7721647b0df6602c2618937c1da +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-05-08 08:47:11 +0200 + + Update the Figure in the README + +commit 8021c7cb9aac06e961227a3c0e0b013ec2d2d501 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-05-07 16:15:23 +0200 + + Bugfix: Reset maximum event concentration for each event + +commit 508d883f7689d617d15915dbd26a27f1613bb857 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-05-07 12:04:28 +0200 + + Make quarterly labels for plot.TOXSWA_cwa + +commit c6e57ab29170266b3038b01c54bf161ab361d440 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-04-24 02:22:21 +0200 + + Do not test the path to the zip file + +commit 7d2096855edcc196629c1c7a9983a56ec6addd1e +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-04-24 02:21:04 +0200 + + Add a geometric mean function + +commit bcfe0af7970efe36c3aa661e89953fbe3689c310 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-04-24 02:20:21 +0200 + + Clean the Makefile a bit + +commit 768a043848dd84b9e699916657d0a23b2f3b9e83 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-04-22 13:48:42 +0200 + + Fix header formatting + +commit 04502ca0c658a6c929debd61aee87be8c7eceb04 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-04-22 13:46:32 +0200 + + Update markdown version of README + +commit ec79637749d300ab4ca170805c673905e52d67dd +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-04-22 13:42:10 +0200 + + Add simplest PEC soil calcs, use testthat + +commit 8ffbc49b3f01deac6f9e83aaa6d318d4e2f8552b +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-01-23 16:44:04 +0100 + + Add option to plot relative to maximum + +commit 8975dc148d0a6f222174980eb60314054be9b6cf +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-01-13 14:54:58 +0100 + + Fix warning in README + +commit 891af5d0f1ee8d45cd4403af43293463d23ba96b +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-01-13 14:05:31 +0100 + + README.rmd with example, fix reading unzipped files + +commit 4d74570f1ca4a94d894c6c5169684a8246d0a51c +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-01-13 12:58:26 +0100 + + Correctly initialize R6 fields, read from zip files + +commit ee070c11f7c7faff2f573d27cf32aafab78971a8 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2015-01-07 23:56:54 +0100 + + Pass ... parameters to added cwa lines + +commit 92d97ba99d7b90d95a67796cb5e68f28f752b70b +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2014-12-17 21:39:42 +0100 + + Initial commit: R6 class for TOXSWA cwa files |