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2023-11-12Update static docsJohannes Ranke12-1318/+981
2023-11-12Start RStudio project, some maintenanceRanke Johannes8-11/+136
2023-06-21Don't write git log to ChangeLog any moreRanke Johannes1-1/+0
2022-11-11Simplify travis configJohannes Ranke1-8/+0
2022-11-11Try to simplify drat configurationJohannes Ranke1-2/+2
2022-11-11Disable bspm to make install from drat workJohannes Ranke1-1/+1
2022-11-11Fix last commitJohannes Ranke1-1/+1
2022-11-11Install drat to use it...Johannes Ranke1-1/+2
2022-11-11Another attempt to make drat work on travisJohannes Ranke1-2/+1
2022-11-11Try to make drat workJohannes Ranke1-4/+3
2022-11-11mkin was not pulled from the drat repoJohannes Ranke1-0/+1
2022-11-11Use drat instead of install_githubJohannes Ranke1-3/+2
2022-11-11Forgot to commit .travis.yml ...Johannes Ranke1-0/+2
2022-11-11mkin and chents from github for check on travisJohannes Ranke1-1/+1
2022-11-11Don't force suggested packagesJohannes Ranke1-1/+2
2022-11-11Remove Remotes: field from DESCRIPTIONJohannes Ranke6-4/+79
It causes trouble with remotes::install_deps() on travis, see the various previous build logs.
2022-11-11Fix call to download.file for debuggingJohannes Ranke1-1/+1
2022-11-11Try to debug the failure in remotes::install_depsJohannes Ranke1-0/+1
2022-11-11Typo, remove PELMO related suggestionsJohannes Ranke2-7/+3
PELMO related functions are not used in pfm, so apart from advertising, these suggestions did not do anything.
2022-11-10Revert standalone option for remotes on travisJohannes Ranke1-2/+0
2022-11-10Yet another attempt on remotes on travisJohannes Ranke1-1/+2
2022-11-10Another attempt to make remotes work on travisJohannes Ranke1-1/+1
2022-11-10Try to make remotes workJohannes Ranke1-0/+1
2022-11-10Skip BSPM, it's the defaultJohannes Ranke1-3/+1
2022-11-10Only install dependencies, as chents fails to installJohannes Ranke1-1/+1
2022-11-10Use Dirks run.sh on travisJohannes Ranke1-7/+36
2022-11-10set_nd_nq is now in mkin, fix Steps12 bugJohannes Ranke13-398/+75
If a scenario with a slash "/" was selected in PEC_sw_focus(), the Step 2 file generated giving an error (path not found) in the Steps12 calculator, because the scenario name is part of the "compound" name in this implementation, in order to show it in the list that the calculator presents.
2021-11-19Update static docsJohannes Ranke8-28/+31
2021-11-19Update docs and logsJohannes Ranke5-24/+47
2021-11-18Update README after changing default branch to mainJohannes Ranke2-65/+71
2021-02-10Treat Kfoc = 0 like Exposit in runoff calcsJohannes Ranke1-1/+2
2020-07-23PEC_sw_drift: Rautmann formula (1 app, Ackerbau)Johannes Ranke14-56/+119
This makes it possible to calculate drift PECsw for other distances than present in the JKI data or the Rautmann paper.
2020-07-23Update docs, use R6 support of roxygenJohannes Ranke15-135/+225
2020-07-21Clean test.log after testingJohannes Ranke3-13/+26
2020-07-07Remove copyright headers, update TOXSWA_cwa testJohannes Ranke22-213/+50
- The window column of the windows component of a TOXSWA_cwa object is not a factor any more, but a character vector. - testthat::expect_equal_to_reference is replaced by testthat::expect_known_output, so we can have git diff show what has changed
2020-07-07Adapt pfm_degradation to current mkinJohannes Ranke2-26/+9
use_of_ff = "max" is now the default
2020-06-17TSCF estimation equations, update docsJohannes Ranke39-383/+1008
Briggs et al. (1982) and Dettenmaier et al. (2009)
2020-04-17Skip testing on R-develJohannes Ranke1-1/+0
it currently fails with ✖ | 6 1 | Read and analyse TOXSWA cwa files [6.4 s] ──────────────────────────────────────────────────────────────────────────────────────────────────── test_TOXSWA.R:68: failure: Getting events and moving window analysis works H_sw_R1_stream$windows has changed from known value recorded in 'H_sw_R1_stream_windows.rds'. Component "window": Modes: character, numeric Component "window": Attributes: < target is NULL, current is list > Component "window": target is character, current is factor
2020-04-16Make na.rm = FALSE the default for geomean()Johannes Ranke51-412/+723
This makes more sense and is in line with mean() from base R. Adapt tests and update docs.
2020-02-19Check in last build logJohannes Ranke3-3/+15
2019-10-23Fix static docs for set_nd_nqJohannes Ranke7-53/+27
2019-10-23Updated ChangeLog and DESCRIPTIONJohannes Ranke2-1/+7
2019-10-15Residue processing for depth profiles over timeJohannes Ranke14-427/+627
2019-10-10Do not mess with zero values at time zeroJohannes Ranke3-21/+32
2019-10-10Fix set_nd for metabolites, handle zero at time zeroJohannes Ranke5-9/+23
2019-10-10Fix documentation for set_ndJohannes Ranke4-61/+26
2019-10-10Finish documentation of set_nd and test itJohannes Ranke10-18/+339
2019-10-09Function to set non-detects in residue seriesJohannes Ranke6-4/+187
2019-09-27Built windows binary for dratJohannes Ranke2-10/+7
2019-09-27Fix for UK drainage, some EFSA interception and washoffJohannes Ranke77-2042/+758
- PEC_sw_drainage_UK() gave results that were a little bit too high for the substances with the highest Koc (>4000), as I used 0.01% instead of 0.008% for them. This must have come from an old vesion of the UK data requirements handbook, at least I do not have another explanation - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 crop wash-off factors (from 2017 PEC soil guidance) for some major arable crops - Update docs

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