| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2017-01-29 | Setting up PELMO runs, execution and evaluation | Johannes Ranke | 28 | -80/+1717 | |
| It all works! | |||||
| 2017-01-27 | Merge branch 'master' of jrwb.de:pfm | Johannes Ranke | 1 | -0/+0 | |
| 2017-01-27 | Really use all scenarios in test data | Johannes Ranke | 1 | -0/+0 | |
| Maize, that was used in the last commit, is not parameterised for Jokioinen | |||||
| 2017-01-27 | Use all scenarios in the test data | Johannes Ranke | 1 | -0/+0 | |
| 2017-01-27 | Also test run with metabolites | Johannes Ranke | 3 | -34/+45 | |
| 2017-01-27 | Merge branch 'master' of jrwb.de:pfm | Johannes Ranke | 1 | -0/+0 | |
| 2017-01-27 | Include a run with metabolites in PELMO test data | Johannes Ranke | 1 | -0/+0 | |
| 2017-01-27 | Set up FOCUS PELMO runs and run them in parallel | Johannes Ranke | 17 | -6/+778 | |
| - This works on Linux using wine - PELMO runs (including pelmo.inp files) are correctly generated - The PLM files for FOCUS Pesticide_D in the test data archive are correctly reproduced - The data files (including FOCUS groundwater scenario data) are now created and documented in R files | |||||
| 2017-01-26 | Improved test data with 'irrigation' | Johannes Ranke | 1 | -0/+0 | |
| 2017-01-25 | More variable selection of test data | Johannes Ranke | 1 | -0/+0 | |
| 2017-01-25 | Use tar.bz2 to correctly transfer file names | Johannes Ranke | 2 | -0/+0 | |
| 2017-01-25 | Add FOCUS PELMO 5.5.3 output for dummy pesticide D | Johannes Ranke | 1 | -0/+0 | |
| 2017-01-19 | Another correction of the docs | Johannes Ranke | 3 | -15/+15 | |
| 2017-01-19 | Corrections in the documentation | Johannes Ranke | 4 | -23/+60 | |
| 2017-01-19 | Correct default y axis label for plot.one_box | Johannes Ranke | 11 | -3/+3 | |
| 2017-01-19 | Fix one_box for ini = 1, use in sawtooth examples | Johannes Ranke | 10 | -14/+26 | |
| 2017-01-19 | Move mkin::twa to pfm::max_twa.mkinfit | Johannes Ranke | 14 | -19/+182 | |
| - Add max_twa.mkinfit() recently introduced to mkin as mkin::twa() but never released with it - Add a test to check max_twa.one_box() against analytical solutions in max_twa.mkinfit(). - Clean up R CMD check - Update docs | |||||
| 2017-01-19 | Make max_twa() a bit safer | Johannes Ranke | 3 | -4/+30 | |
| 2017-01-19 | Documentation updates | Johannes Ranke | 6 | -16/+14 | |
| 2017-01-19 | Fix order of arguments to one_box, correct docs | Johannes Ranke | 8 | -21/+81 | |
| 2017-01-19 | Predict parent decline without fitting for non-SFO models | Johannes Ranke | 9 | -10/+63 | |
| 2017-01-19 | Switch sawtooth plotting example to FOMC | Johannes Ranke | 6 | -13/+29 | |
| as this it is claimed in the README that an mkinfit prediction is used. - Add another seealso link - Delete trailing whitespace | |||||
| 2017-01-18 | Point to the github.io documentation site | Johannes Ranke | 2 | -4/+4 | |
| 2017-01-18 | Make README.md simple, and point to the reference | Johannes Ranke | 7 | -175803/+12 | |
| 2017-01-18 | Update static docs using pkgdown | Johannes Ranke | 73 | -10450/+3840 | |
| - Add _pkgdown.yml for a structured function/data reference - Make seealso links active - Make mkinfit calls quiet - Use pkgdown branch from pull request hadley/pkgdown#229 to have topics ordered | |||||
| 2017-01-18 | One box time series and twa values | Johannes Ranke | 9 | -3/+423 | |
| - one_box() creates decline time series from mkinfit objects or simply from a half-life - sawtooth() generates sawtooth curves for arbitrary application patterns and decline models - twa() calculates moving window averages - max_twa() gives their maxima and - plot.one_box() can plot series generated by one_box() or sawtooth(), optionally adding a greay rectangle to illustrate the maximum moving window time weighted average | |||||
| 2016-12-22 | Merge branch 'master' of ssh://jrwb.de/pfm | Johannes Ranke | 17 | -26/+12 | |
| 2016-12-22 | Fix reading in times from .out files | Johannes Ranke | 3 | -8/+28 | |
| The code from the previous commit was broken. Also, the time zone for the times that are read is now wet to 'UTC', in order to avoid setting different time zones due to daylight savings, which introduces artificial one-hour offsets on changeover days. | |||||
| 2016-12-14 | Changelog update and roxygen run | Johannes Ranke | 18 | -27/+19 | |
| 2016-12-14 | Set time correctly for 00:00 hours in .out file | Johannes Ranke | 1 | -5/+10 | |
| For ConLiqWatLayCur_xxxxx entries which are output at 00:00 (midnight), no time is listed in the .out file for this time. This commit introduces a workaround, setting the time to 00:00 when there is no time information. | |||||
| 2016-12-12 | Fix reading .out for acronyms containing numbers | Johannes Ranke | 5 | -5/+17 | |
| 2016-10-13 | Add drat target, remove unmaintained usage hints | Johannes Ranke | 1 | -10/+3 | |
| 2016-09-27 | Reorganise repository using standard package layout | Johannes Ranke | 121 | -29/+10927 | |
| 2016-09-27 | Make the chents package optional | Johannes Ranke | 3 | -8/+7 | |
| 2016-09-23 | Keep the graph for the markdown file | Johannes Ranke | 2 | -1/+0 | |
| The markdown file is not self-contained as the html file... | |||||
| 2016-09-23 | Slightly update the README | Johannes Ranke | 6 | -29/+175503 | |
| 2016-07-30 | Update static documentation | Johannes Ranke | 17 | -41/+55 | |
| 2016-07-30 | Add 'methods' to dependecies | Johannes Ranke | 1 | -1/+2 | |
| 2016-07-30 | Fix the TOXSWA reading test | Johannes Ranke | 2 | -8/+13 | |
| Since a recent commit we are reading the concentrations at the end of each hour, so the test needed to be updated accordingly | |||||
| 2016-07-30 | Import 'is' from methods | Johannes Ranke | 2 | -0/+2 | |
| 2016-07-30 | Read cwas from .out files with metabolites | Johannes Ranke | 2 | -7/+29 | |
| TOXSWA 4 stores the detailed output for SWASH runs with metabolites in its .out files. With this commit it is possible to read in .out files from such runs with metabolites. Default is to read in the concentrations for the parent, a newly gained "substance" argument makes it possible to specify the metabolite for which the data should be read. | |||||
| 2016-07-15 | Fix calculation of t_firstjan | Johannes Ranke | 2 | -2/+8 | |
| There is an inconsistency in (some?) output files, so the first datetime needs to be fixed before reading it into a data frame | |||||
| 2016-06-08 | Clean up remainders of NL drift calculation function | Johannes Ranke | 2 | -38/+0 | |
| 2016-06-08 | Merge branch 'master' of https://github.com/jranke/pfm | Johannes Ranke | 0 | -0/+0 | |
| 2016-06-08 | Use the concentration at the end of the hour | Johannes Ranke | 3 | -6/+10 | |
| This is also what TOXSWA presents in the summary files | |||||
| 2016-06-08 | Use the concentration at the end of the hour | Johannes Ranke | 2 | -4/+8 | |
| This is also what TOXSWA presents in the summary files | |||||
| 2016-03-10 | Merge the NL drift calculations based on percentages into PEC_sw_drift | Johannes Ranke | 5 | -54/+56 | |
| 2016-03-10 | Add NL specific drift calculations | Johannes Ranke | 2 | -2/+51 | |
| 2016-03-02 | Fix the name of the Chateadun scenario | Johannes Ranke | 2 | -2/+2 | |
| 2016-02-04 | Test reading .out files and close connections | Johannes Ranke | 5 | -5/+27 | |
 |
index : pfm | |
| Utilities for pesticide fate modelling (also on github) | Johannes Ranke |
| aboutsummaryrefslogtreecommitdiff |