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2022-11-10set_nd_nq is now in mkin, fix Steps12 bugJohannes Ranke1-0/+12
If a scenario with a slash "/" was selected in PEC_sw_focus(), the Step 2 file generated giving an error (path not found) in the Steps12 calculator, because the scenario name is part of the "compound" name in this implementation, in order to show it in the list that the calculator presents.
2021-11-19Update docs and logsJohannes Ranke1-0/+21
2020-07-23PEC_sw_drift: Rautmann formula (1 app, Ackerbau)Johannes Ranke1-0/+6
This makes it possible to calculate drift PECsw for other distances than present in the JKI data or the Rautmann paper.
2020-07-23Update docs, use R6 support of roxygenJohannes Ranke1-0/+6
2020-07-21Clean test.log after testingJohannes Ranke1-0/+12
2020-07-07Remove copyright headers, update TOXSWA_cwa testJohannes Ranke1-0/+32
- The window column of the windows component of a TOXSWA_cwa object is not a factor any more, but a character vector. - testthat::expect_equal_to_reference is replaced by testthat::expect_known_output, so we can have git diff show what has changed
2020-06-17TSCF estimation equations, update docsJohannes Ranke1-0/+9
Briggs et al. (1982) and Dettenmaier et al. (2009)
2020-04-16Make na.rm = FALSE the default for geomean()Johannes Ranke1-0/+6
This makes more sense and is in line with mean() from base R. Adapt tests and update docs.
2020-02-19Check in last build logJohannes Ranke1-0/+12
2019-10-23Updated ChangeLog and DESCRIPTIONJohannes Ranke1-0/+6
2019-10-15Residue processing for depth profiles over timeJohannes Ranke1-0/+6
2019-10-10Do not mess with zero values at time zeroJohannes Ranke1-0/+6
2019-10-10Fix set_nd for metabolites, handle zero at time zeroJohannes Ranke1-0/+12
2019-10-10Finish documentation of set_nd and test itJohannes Ranke1-0/+6
2019-10-09Function to set non-detects in residue seriesJohannes Ranke1-0/+6
2019-09-27Built windows binary for dratJohannes Ranke1-4/+4
2019-09-27Fix for UK drainage, some EFSA interception and washoffJohannes Ranke1-0/+41
- PEC_sw_drainage_UK() gave results that were a little bit too high for the substances with the highest Koc (>4000), as I used 0.01% instead of 0.008% for them. This must have come from an old vesion of the UK data requirements handbook, at least I do not have another explanation - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 crop wash-off factors (from 2017 PEC soil guidance) for some major arable crops - Update docs
2019-06-12Documentation fixJohannes Ranke1-0/+6
2019-05-14Version bump and doc updateJohannes Ranke1-0/+9
2019-05-14Add Exposit version 3.01a2 for runoff calculationsJohannes Ranke1-0/+6
At the request of Muris Korkaric (Agroscope). This is for 3 m buffer only and provides consistency with earlier calculations
2019-04-29Additional runoff data used by AgroscopeJohannes Ranke1-0/+15
2019-04-26Another take on completing the drift dataJohannes Ranke1-0/+8
The R script I used yesterday got lost because I used the .Rd file that got overwritten by roxygen later.
2019-04-25Add more drift data, especially 3 m field crop dataJohannes Ranke1-0/+20
To support Agroscope in doing lots of PEC calculations for Switzerland
2019-02-21Use codecovJohannes Ranke1-1/+28
2019-02-19Add another test for Exposit drainageJohannes Ranke1-0/+20
to test overriding the mobility group derived from Koc
2019-02-19Add German drainage calculations using Exposit 3.02Johannes Ranke1-0/+6
2019-02-08Make SSLRC and PEC drainage UK accept NA for KocJohannes Ranke1-0/+6
2019-01-31Separate out PELMO utilities into rPELMOJohannes Ranke1-0/+12
2018-09-27Create valid Step 1 files with fewer argumentsJohannes Ranke1-0/+6
2018-09-22Add test and update docsJohannes Ranke1-0/+6
2018-09-21Support FOMC in PEC_soilJohannes Ranke1-0/+6
2018-07-11Improve PELMO testsJohannes Ranke1-0/+21
2018-07-10EFSA PEC soil guidance from 2017Johannes Ranke1-0/+14
- Implement the new guidance as well as possible - Maintenance work addressing CRAN checks
2018-07-04Some documentation updatesJohannes Ranke1-0/+18
Document that TOXSWA 5.5.3 is supported in the help files
2018-06-11Adapt to TOXSWA 5.5.3Johannes Ranke1-0/+9
2018-06-08Enable PEC porewater for the default scenarioJohannes Ranke1-1/+1
The default scenario uses soil parameters from the REACH guidance R.16, Table R.16-9.
2018-06-08Add actual/twa calcs for FOMC, typoJohannes Ranke1-0/+24
2018-03-01Add a README.html for cgit.jrwb.deJohannes Ranke1-0/+9
2018-03-01Rebuild static docs using current pkdownJohannes Ranke1-0/+12
Process PELMO runs in example using 15 (hyperthreading) cores and show processor info.
2018-01-29Documentation fixes and updatesJohannes Ranke1-0/+8
2018-01-29Correction of return value documentation for PEC_sw_exposit_runoffJohannes Ranke1-0/+6
Rebuild pkgdown documentation
2017-12-15Improve handling of ยต in y axis for plot.TOXSWA_cwaJohannes Ranke1-0/+14
2017-11-04Option to thin low TOXSWA PECsw data for plottingJohannes Ranke1-0/+6
to reduce the file size of plots e.g. as PDF files
2017-11-03Also return runoff percentagesJohannes Ranke1-0/+6
2017-10-27Exposit runoff calculations for surface waterJohannes Ranke1-0/+6
2017-10-23Typos, rebuild static docsJohannes Ranke1-0/+12
2017-10-09Write Step 2 input files on windowsJohannes Ranke1-0/+15
2017-08-24Build for windows using roxygen from masterJohannes Ranke1-0/+26
Now that roxygen can handle UTF8 characters in function arguments thanks to Hadley Wickham and Jim Hester
2017-07-21New Option for Step 1, fix example, update docsJohannes Ranke1-2/+11
Also add the reference file for testing Step12 input file generation
2017-06-22Add scenario, region and season to run nameJohannes Ranke1-0/+33

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