pfm - Utilities for pesticide fate modelling (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2017-06-19	Single line of generated Step12 input file partially validated	Johannes Ranke	1	-0/+24

2017-05-24	Re-enable PELMO examples and tests	Johannes Ranke	1	-0/+12
	- Add .gitattributes to make sure CRLF line endings are kept for PELMO .psm files - Update static docs
2017-05-17	Simplify tests where possible	Johannes Ranke	1	-0/+28

2017-05-16	Add TWA concentrations for days > 1, fix link	Johannes Ranke	1	-0/+9
	Now we have seven test calculations for the Step 1 calculator, all perfectly passing. This provides confidence that this is a correct reimplementation of the Step 1 part of the Step 1/2 calculator.
2017-05-16	Finish the Step 1 calculator including tests	Johannes Ranke	1	-0/+18
	Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer
2017-03-28	Update Changelog	Johannes Ranke	1	-0/+18

2017-01-31	Small documentation fix	Johannes Ranke	1	-0/+12

2017-01-30	Correct psm file in the example with metabolites	Johannes Ranke	1	-0/+15

2017-01-30	Test reproducing the FOCUS Summary information	Johannes Ranke	1	-0/+14
	generated from the FOCUS PELMO GUI, as copied into the text files in the testdata directory.
2017-01-30	Use relative tolerance of 1e-6 for flux test	Johannes Ranke	1	-0/+12
	to pass test also for more extreme situations as in the current test data.
2017-01-30	Better documentation of PELMO_runs().	Johannes Ranke	1	-1/+7

2017-01-29	Setting up PELMO runs, execution and evaluation	Johannes Ranke	1	-0/+29
	It all works!
2017-01-27	Also test run with metabolites	Johannes Ranke	1	-2/+9

2017-01-27	Set up FOCUS PELMO runs and run them in parallel	Johannes Ranke	1	-0/+48
	- This works on Linux using wine - PELMO runs (including pelmo.inp files) are correctly generated - The PLM files for FOCUS Pesticide_D in the test data archive are correctly reproduced - The data files (including FOCUS groundwater scenario data) are now created and documented in R files
2017-01-19	Corrections in the documentation	Johannes Ranke	1	-0/+12

2017-01-19	Fix one_box for ini = 1, use in sawtooth examples	Johannes Ranke	1	-0/+13

2017-01-19	Move mkin::twa to pfm::max_twa.mkinfit	Johannes Ranke	1	-0/+6
	- Add max_twa.mkinfit() recently introduced to mkin as mkin::twa() but never released with it - Add a test to check max_twa.one_box() against analytical solutions in max_twa.mkinfit(). - Clean up R CMD check - Update docs
2017-01-19	Make max_twa() a bit safer	Johannes Ranke	1	-0/+12

2017-01-19	Fix order of arguments to one_box, correct docs	Johannes Ranke	1	-0/+56

2017-01-18	One box time series and twa values	Johannes Ranke	1	-0/+17
	- one_box() creates decline time series from mkinfit objects or simply from a half-life - sawtooth() generates sawtooth curves for arbitrary application patterns and decline models - twa() calculates moving window averages - max_twa() gives their maxima and - plot.one_box() can plot series generated by one_box() or sawtooth(), optionally adding a greay rectangle to illustrate the maximum moving window time weighted average
2016-12-22	Fix reading in times from .out files	Johannes Ranke	1	-0/+17
	The code from the previous commit was broken. Also, the time zone for the times that are read is now wet to 'UTC', in order to avoid setting different time zones due to daylight savings, which introduces artificial one-hour offsets on changeover days.
2016-12-12	Fix reading .out for acronyms containing numbers	Johannes Ranke	1	-0/+12

2016-09-27	Reorganise repository using standard package layout	Johannes Ranke	1	-0/+392