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2019-04-29Additional runoff data used by AgroscopeJohannes Ranke1-0/+15
2019-04-26Another take on completing the drift dataJohannes Ranke1-0/+8
The R script I used yesterday got lost because I used the .Rd file that got overwritten by roxygen later.
2019-04-25Add more drift data, especially 3 m field crop dataJohannes Ranke1-0/+20
To support Agroscope in doing lots of PEC calculations for Switzerland
2019-02-21Use codecovJohannes Ranke1-1/+28
2019-02-19Add another test for Exposit drainageJohannes Ranke1-0/+20
to test overriding the mobility group derived from Koc
2019-02-19Add German drainage calculations using Exposit 3.02Johannes Ranke1-0/+6
2019-02-08Make SSLRC and PEC drainage UK accept NA for KocJohannes Ranke1-0/+6
2019-01-31Separate out PELMO utilities into rPELMOJohannes Ranke1-0/+12
2018-09-27Create valid Step 1 files with fewer argumentsJohannes Ranke1-0/+6
2018-09-22Add test and update docsJohannes Ranke1-0/+6
2018-09-21Support FOMC in PEC_soilJohannes Ranke1-0/+6
2018-07-11Improve PELMO testsJohannes Ranke1-0/+21
2018-07-10EFSA PEC soil guidance from 2017Johannes Ranke1-0/+14
- Implement the new guidance as well as possible - Maintenance work addressing CRAN checks
2018-07-04Some documentation updatesJohannes Ranke1-0/+18
Document that TOXSWA 5.5.3 is supported in the help files
2018-06-11Adapt to TOXSWA 5.5.3Johannes Ranke1-0/+9
2018-06-08Enable PEC porewater for the default scenarioJohannes Ranke1-1/+1
The default scenario uses soil parameters from the REACH guidance R.16, Table R.16-9.
2018-06-08Add actual/twa calcs for FOMC, typoJohannes Ranke1-0/+24
2018-03-01Add a README.html for cgit.jrwb.deJohannes Ranke1-0/+9
2018-03-01Rebuild static docs using current pkdownJohannes Ranke1-0/+12
Process PELMO runs in example using 15 (hyperthreading) cores and show processor info.
2018-01-29Documentation fixes and updatesJohannes Ranke1-0/+8
2018-01-29Correction of return value documentation for PEC_sw_exposit_runoffJohannes Ranke1-0/+6
Rebuild pkgdown documentation
2017-12-15Improve handling of ยต in y axis for plot.TOXSWA_cwaJohannes Ranke1-0/+14
2017-11-04Option to thin low TOXSWA PECsw data for plottingJohannes Ranke1-0/+6
to reduce the file size of plots e.g. as PDF files
2017-11-03Also return runoff percentagesJohannes Ranke1-0/+6
2017-10-27Exposit runoff calculations for surface waterJohannes Ranke1-0/+6
2017-10-23Typos, rebuild static docsJohannes Ranke1-0/+12
2017-10-09Write Step 2 input files on windowsJohannes Ranke1-0/+15
2017-08-24Build for windows using roxygen from masterJohannes Ranke1-0/+26
Now that roxygen can handle UTF8 characters in function arguments thanks to Hadley Wickham and Jim Hester
2017-07-21New Option for Step 1, fix example, update docsJohannes Ranke1-2/+11
Also add the reference file for testing Step12 input file generation
2017-06-22Add scenario, region and season to run nameJohannes Ranke1-0/+33
2017-06-20Tests for Step 1 and 2 (input file only) pass, PELMO failsJohannes Ranke1-0/+16
There are spurious errors in the output PELMO generates. Two examples are in the test.log
2017-06-19Single line of generated Step12 input file partially validatedJohannes Ranke1-0/+24
2017-05-24Re-enable PELMO examples and testsJohannes Ranke1-0/+12
- Add .gitattributes to make sure CRLF line endings are kept for PELMO .psm files - Update static docs
2017-05-17Simplify tests where possibleJohannes Ranke1-0/+28
2017-05-16Add TWA concentrations for days > 1, fix linkJohannes Ranke1-0/+9
Now we have seven test calculations for the Step 1 calculator, all perfectly passing. This provides confidence that this is a correct reimplementation of the Step 1 part of the Step 1/2 calculator.
2017-05-16Finish the Step 1 calculator including testsJohannes Ranke1-0/+18
Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer
2017-03-28Update ChangelogJohannes Ranke1-0/+18
2017-01-31Small documentation fixJohannes Ranke1-0/+12
2017-01-30Correct psm file in the example with metabolitesJohannes Ranke1-0/+15
2017-01-30Test reproducing the FOCUS Summary informationJohannes Ranke1-0/+14
generated from the FOCUS PELMO GUI, as copied into the text files in the testdata directory.
2017-01-30Use relative tolerance of 1e-6 for flux testJohannes Ranke1-0/+12
to pass test also for more extreme situations as in the current test data.
2017-01-30Better documentation of PELMO_runs().Johannes Ranke1-1/+7
2017-01-29Setting up PELMO runs, execution and evaluationJohannes Ranke1-0/+29
It all works!
2017-01-27Also test run with metabolitesJohannes Ranke1-2/+9
2017-01-27Set up FOCUS PELMO runs and run them in parallelJohannes Ranke1-0/+48
- This works on Linux using wine - PELMO runs (including pelmo.inp files) are correctly generated - The PLM files for FOCUS Pesticide_D in the test data archive are correctly reproduced - The data files (including FOCUS groundwater scenario data) are now created and documented in R files
2017-01-19Corrections in the documentationJohannes Ranke1-0/+12
2017-01-19Fix one_box for ini = 1, use in sawtooth examplesJohannes Ranke1-0/+13
2017-01-19Move mkin::twa to pfm::max_twa.mkinfitJohannes Ranke1-0/+6
- Add max_twa.mkinfit() recently introduced to mkin as mkin::twa() but never released with it - Add a test to check max_twa.one_box() against analytical solutions in max_twa.mkinfit(). - Clean up R CMD check - Update docs
2017-01-19Make max_twa() a bit saferJohannes Ranke1-0/+12
2017-01-19Fix order of arguments to one_box, correct docsJohannes Ranke1-0/+56

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