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2020-04-16Make na.rm = FALSE the default for geomean()Johannes Ranke1-0/+6
This makes more sense and is in line with mean() from base R. Adapt tests and update docs.
2020-02-19Check in last build logJohannes Ranke1-0/+12
2019-10-23Updated ChangeLog and DESCRIPTIONJohannes Ranke1-0/+6
2019-10-15Residue processing for depth profiles over timeJohannes Ranke1-0/+6
2019-10-10Do not mess with zero values at time zeroJohannes Ranke1-0/+6
2019-10-10Fix set_nd for metabolites, handle zero at time zeroJohannes Ranke1-0/+12
2019-10-10Finish documentation of set_nd and test itJohannes Ranke1-0/+6
2019-10-09Function to set non-detects in residue seriesJohannes Ranke1-0/+6
2019-09-27Built windows binary for dratJohannes Ranke1-4/+4
2019-09-27Fix for UK drainage, some EFSA interception and washoffJohannes Ranke1-0/+41
- PEC_sw_drainage_UK() gave results that were a little bit too high for the substances with the highest Koc (>4000), as I used 0.01% instead of 0.008% for them. This must have come from an old vesion of the UK data requirements handbook, at least I do not have another explanation - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 crop wash-off factors (from 2017 PEC soil guidance) for some major arable crops - Update docs
2019-06-12Documentation fixJohannes Ranke1-0/+6
2019-05-14Version bump and doc updateJohannes Ranke1-0/+9
2019-05-14Add Exposit version 3.01a2 for runoff calculationsJohannes Ranke1-0/+6
At the request of Muris Korkaric (Agroscope). This is for 3 m buffer only and provides consistency with earlier calculations
2019-04-29Additional runoff data used by AgroscopeJohannes Ranke1-0/+15
2019-04-26Another take on completing the drift dataJohannes Ranke1-0/+8
The R script I used yesterday got lost because I used the .Rd file that got overwritten by roxygen later.
2019-04-25Add more drift data, especially 3 m field crop dataJohannes Ranke1-0/+20
To support Agroscope in doing lots of PEC calculations for Switzerland
2019-02-21Use codecovJohannes Ranke1-1/+28
2019-02-19Add another test for Exposit drainageJohannes Ranke1-0/+20
to test overriding the mobility group derived from Koc
2019-02-19Add German drainage calculations using Exposit 3.02Johannes Ranke1-0/+6
2019-02-08Make SSLRC and PEC drainage UK accept NA for KocJohannes Ranke1-0/+6
2019-01-31Separate out PELMO utilities into rPELMOJohannes Ranke1-0/+12
2018-09-27Create valid Step 1 files with fewer argumentsJohannes Ranke1-0/+6
2018-09-22Add test and update docsJohannes Ranke1-0/+6
2018-09-21Support FOMC in PEC_soilJohannes Ranke1-0/+6
2018-07-11Improve PELMO testsJohannes Ranke1-0/+21
2018-07-10EFSA PEC soil guidance from 2017Johannes Ranke1-0/+14
- Implement the new guidance as well as possible - Maintenance work addressing CRAN checks
2018-07-04Some documentation updatesJohannes Ranke1-0/+18
Document that TOXSWA 5.5.3 is supported in the help files
2018-06-11Adapt to TOXSWA 5.5.3Johannes Ranke1-0/+9
2018-06-08Enable PEC porewater for the default scenarioJohannes Ranke1-1/+1
The default scenario uses soil parameters from the REACH guidance R.16, Table R.16-9.
2018-06-08Add actual/twa calcs for FOMC, typoJohannes Ranke1-0/+24
2018-03-01Add a README.html for cgit.jrwb.deJohannes Ranke1-0/+9
2018-03-01Rebuild static docs using current pkdownJohannes Ranke1-0/+12
Process PELMO runs in example using 15 (hyperthreading) cores and show processor info.
2018-01-29Documentation fixes and updatesJohannes Ranke1-0/+8
2018-01-29Correction of return value documentation for PEC_sw_exposit_runoffJohannes Ranke1-0/+6
Rebuild pkgdown documentation
2017-12-15Improve handling of ยต in y axis for plot.TOXSWA_cwaJohannes Ranke1-0/+14
2017-11-04Option to thin low TOXSWA PECsw data for plottingJohannes Ranke1-0/+6
to reduce the file size of plots e.g. as PDF files
2017-11-03Also return runoff percentagesJohannes Ranke1-0/+6
2017-10-27Exposit runoff calculations for surface waterJohannes Ranke1-0/+6
2017-10-23Typos, rebuild static docsJohannes Ranke1-0/+12
2017-10-09Write Step 2 input files on windowsJohannes Ranke1-0/+15
2017-08-24Build for windows using roxygen from masterJohannes Ranke1-0/+26
Now that roxygen can handle UTF8 characters in function arguments thanks to Hadley Wickham and Jim Hester
2017-07-21New Option for Step 1, fix example, update docsJohannes Ranke1-2/+11
Also add the reference file for testing Step12 input file generation
2017-06-22Add scenario, region and season to run nameJohannes Ranke1-0/+33
2017-06-20Tests for Step 1 and 2 (input file only) pass, PELMO failsJohannes Ranke1-0/+16
There are spurious errors in the output PELMO generates. Two examples are in the test.log
2017-06-19Single line of generated Step12 input file partially validatedJohannes Ranke1-0/+24
2017-05-24Re-enable PELMO examples and testsJohannes Ranke1-0/+12
- Add .gitattributes to make sure CRLF line endings are kept for PELMO .psm files - Update static docs
2017-05-17Simplify tests where possibleJohannes Ranke1-0/+28
2017-05-16Add TWA concentrations for days > 1, fix linkJohannes Ranke1-0/+9
Now we have seven test calculations for the Step 1 calculator, all perfectly passing. This provides confidence that this is a correct reimplementation of the Step 1 part of the Step 1/2 calculator.
2017-05-16Finish the Step 1 calculator including testsJohannes Ranke1-0/+18
Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer
2017-03-28Update ChangelogJohannes Ranke1-0/+18

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