pfm - Utilities for pesticide fate modelling (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2017-01-30	Correct psm file in the example with metabolites	Johannes Ranke	1	-1/+26

2017-01-30	Test reproducing the FOCUS Summary information	Johannes Ranke	2	-1/+10
	generated from the FOCUS PELMO GUI, as copied into the text files in the testdata directory.
2017-01-30	Better documentation of PELMO_runs().	Johannes Ranke	1	-4/+6

2017-01-29	Setting up PELMO runs, execution and evaluation	Johannes Ranke	7	-30/+70
	It all works!
2017-01-27	Set up FOCUS PELMO runs and run them in parallel	Johannes Ranke	8	-1/+169
	- This works on Linux using wine - PELMO runs (including pelmo.inp files) are correctly generated - The PLM files for FOCUS Pesticide_D in the test data archive are correctly reproduced - The data files (including FOCUS groundwater scenario data) are now created and documented in R files
2017-01-19	Another correction of the docs	Johannes Ranke	1	-5/+5

2017-01-19	Corrections in the documentation	Johannes Ranke	1	-6/+14

2017-01-19	Correct default y axis label for plot.one_box	Johannes Ranke	1	-1/+1

2017-01-19	Fix one_box for ini = 1, use in sawtooth examples	Johannes Ranke	3	-3/+3

2017-01-19	Move mkin::twa to pfm::max_twa.mkinfit	Johannes Ranke	2	-4/+27
	- Add max_twa.mkinfit() recently introduced to mkin as mkin::twa() but never released with it - Add a test to check max_twa.one_box() against analytical solutions in max_twa.mkinfit(). - Clean up R CMD check - Update docs
2017-01-19	Make max_twa() a bit safer	Johannes Ranke	1	-1/+5

2017-01-19	Documentation updates	Johannes Ranke	1	-4/+3

2017-01-19	Fix order of arguments to one_box, correct docs	Johannes Ranke	2	-6/+7

2017-01-19	Predict parent decline without fitting for non-SFO models	Johannes Ranke	2	-3/+14

2017-01-19	Switch sawtooth plotting example to FOMC	Johannes Ranke	2	-2/+7
	as this it is claimed in the README that an mkinfit prediction is used. - Add another seealso link - Delete trailing whitespace
2017-01-18	Update static docs using pkgdown	Johannes Ranke	4	-5/+5
	- Add _pkgdown.yml for a structured function/data reference - Make seealso links active - Make mkinfit calls quiet - Use pkgdown branch from pull request hadley/pkgdown#229 to have topics ordered
2017-01-18	One box time series and twa values	Johannes Ranke	5	-0/+167
	- one_box() creates decline time series from mkinfit objects or simply from a half-life - sawtooth() generates sawtooth curves for arbitrary application patterns and decline models - twa() calculates moving window averages - max_twa() gives their maxima and - plot.one_box() can plot series generated by one_box() or sawtooth(), optionally adding a greay rectangle to illustrate the maximum moving window time weighted average
2016-12-14	Changelog update and roxygen run	Johannes Ranke	16	-25/+11

2016-12-12	Fix reading .out for acronyms containing numbers	Johannes Ranke	2	-2/+2

2016-09-27	Reorganise repository using standard package layout	Johannes Ranke	16	-0/+791