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2016-09-27Make the chents package optionalJohannes Ranke2-4/+7
2016-07-30Update static documentationJohannes Ranke17-41/+55
2016-07-30Add 'methods' to dependeciesJohannes Ranke1-1/+2
2016-07-30Fix the TOXSWA reading testJohannes Ranke2-8/+13
Since a recent commit we are reading the concentrations at the end of each hour, so the test needed to be updated accordingly
2016-07-30Import 'is' from methodsJohannes Ranke2-0/+2
2016-07-30Read cwas from .out files with metabolitesJohannes Ranke2-7/+29
TOXSWA 4 stores the detailed output for SWASH runs with metabolites in its .out files. With this commit it is possible to read in .out files from such runs with metabolites. Default is to read in the concentrations for the parent, a newly gained "substance" argument makes it possible to specify the metabolite for which the data should be read.
2016-07-15Fix calculation of t_firstjanJohannes Ranke2-2/+8
There is an inconsistency in (some?) output files, so the first datetime needs to be fixed before reading it into a data frame
2016-06-08Clean up remainders of NL drift calculation functionJohannes Ranke2-38/+0
2016-06-08Use the concentration at the end of the hourJohannes Ranke3-6/+10
This is also what TOXSWA presents in the summary files
2016-03-10Merge the NL drift calculations based on percentages into PEC_sw_driftJohannes Ranke5-54/+56
2016-03-10Add NL specific drift calculationsJohannes Ranke2-2/+51
2016-03-02Fix the name of the Chateadun scenarioJohannes Ranke2-2/+2
2016-02-04Test reading .out files and close connectionsJohannes Ranke5-5/+27
2016-02-04Improve reading spead for new TOXSWA formatJohannes Ranke7-16/+28
2016-02-04Read cwa data from TOXSWA 4.4.2 .out filesJohannes Ranke2-40/+93
2015-12-27Fix rounding of endpoint retrieval functionsJohannes Ranke3-3/+7
2015-12-22EFSA 2015 tier 1 PEC soil, clean up, add static docsJohannes Ranke71-401/+11578
2015-12-18Documentation fixes, chents is currently a hard dependencyJohannes Ranke9-26/+66
2015-10-15Add endpoint and GUS functions, roxygenizeJohannes Ranke25-32/+440
2015-10-01Add some soil data for FOCUS groundwater scenariosJohannes Ranke5-1/+83
2015-09-11Added PEC soil for products as defined in chents v0.1-2Johannes Ranke8-94/+43
2015-09-10Add PEC soil for product with serveral aisJohannes Ranke2-271/+6
2015-08-26Merge branch 'master' into pfm_chentJohannes Ranke2-2/+1
Conflicts: pkg/DESCRIPTION
2015-08-22Updates of DESCRIPTION and NAMESPACEJohannes Ranke2-2/+1
2015-08-22Small documentation updatesJohannes Ranke8-15/+15
2015-08-21Merge branch 'master' into pfm_chentJohannes Ranke24-38/+81
2015-08-21Adapt the description to R CMD check requirementsJohannes Ranke1-3/+3
2015-08-21Updates to pass checks and testsJohannes Ranke9-14/+56
2015-07-02Changes to pass R CMD check --as-cran, roxygen runJohannes Ranke17-25/+26
2015-06-18Merge branch 'master' into pfm_chentJohannes Ranke24-3/+780
Conflicts: pkg/DESCRIPTION pkg/NAMESPACE
2015-06-12Add sediment PEC calculations using the percentage methodJohannes Ranke5-1/+103
2015-06-12Make UK drainage with non-SFO soil degradation workJohannes Ranke1-6/+8
2015-06-11Now we pass R CMD checkJohannes Ranke4-15/+36
2015-06-11Add UK tier 1 drainage PEC calculationsJohannes Ranke6-0/+186
2015-06-11Now there is enough content to warrant 0.2-xJohannes Ranke1-1/+1
2015-06-11Add facilities to calculate decline curvesJohannes Ranke8-1/+208
2015-06-11Rename PEC_sw_drift() to PEC_sw_drift_ini()Johannes Ranke2-3/+59
2015-06-11Add simple drift PEC ini calculationsJohannes Ranke4-0/+112
These are tested for field crops with the CRD spreadsheet
2015-06-11JKI drift percentage data for field crops and pome/stone fruitJohannes Ranke5-1/+90
2015-06-11and the incomplete documentationJohannes Ranke4-0/+101
2015-06-11Intermediate stage for pfm_chentJohannes Ranke4-4/+15
2015-06-11FormattingJohannes Ranke1-1/+1
2015-05-24Start of a pfm_chent data objectJohannes Ranke3-2/+337
2015-05-07Bugfix: Reset maximum event concentration for each eventJohannes Ranke3-0/+1
2015-05-07Make quarterly labels for plot.TOXSWA_cwaJohannes Ranke2-4/+11
2015-04-24Do not test the path to the zip fileJohannes Ranke3-1/+2
2015-04-24Add a geometric mean functionJohannes Ranke4-0/+81
2015-04-22Add simplest PEC soil calcs, use testthatJohannes Ranke13-8/+135
2015-01-23Add option to plot relative to maximumJohannes Ranke3-6/+7
2015-01-13README.rmd with example, fix reading unzipped filesJohannes Ranke1-3/+8

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