From 00e177fdf6929058fd26c3086ae159462ae0a456 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 23 Oct 2019 16:18:24 +0200 Subject: Fix static docs for set_nd_nq --- R/set_nd_nq.R | 4 ++-- docs/404.html | 5 ++++- docs/authors.html | 5 ++++- docs/index.html | 2 +- docs/reference/index.html | 12 +++++------- docs/reference/set_nd_nq.html | 44 ++++++++++--------------------------------- man/set_nd_nq.Rd | 8 +------- 7 files changed, 27 insertions(+), 53 deletions(-) diff --git a/R/set_nd_nq.R b/R/set_nd_nq.R index a372879..37b9a89 100644 --- a/R/set_nd_nq.R +++ b/R/set_nd_nq.R @@ -1,11 +1,11 @@ #' Set non-detects and unquantified values in residue series without replicates - +#' #' This function automates replacing unquantified values in residue time and #' depth series. For time series, the function performs part of the residue #' processing proposed in the FOCUS kinetics guidance for parent compounds #' and metabolites. For two-dimensional residue series over time and depth, #' it automates the proposal of Boesten et al (2015). - +#' #' @param res_raw Character vector of a residue time series, or matrix of #' residue values with rows representing depth profiles for a specific sampling #' time, and columns representing time series of residues at the same depth. diff --git a/docs/404.html b/docs/404.html index 8e5e550..f42956b 100644 --- a/docs/404.html +++ b/docs/404.html @@ -8,11 +8,13 @@ Page not found (404) • pfm + + @@ -32,10 +34,12 @@ + + @@ -79,7 +83,6 @@ Reference - diff --git a/docs/authors.html b/docs/authors.html index ea71b72..05bd9d3 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -8,11 +8,13 @@ Authors • pfm + + @@ -32,10 +34,12 @@ + + @@ -79,7 +83,6 @@ Reference - diff --git a/docs/index.html b/docs/index.html index 33b8434..23000f1 100644 --- a/docs/index.html +++ b/docs/index.html @@ -75,7 +75,7 @@ install.packages("pfm")

Alternatively you can install the package using the devtools package. Using quick = TRUE skips docs, multiple-architecture builds, demos, and vignettes.

library(devtools)
-install_github("jranke/pfm", quick = TRUE)
+install_github("jranke/pfm", quick = TRUE)

diff --git a/docs/reference/index.html b/docs/reference/index.html index e9c7098..0608dd9 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -8,11 +8,13 @@ Function reference • pfm + + @@ -32,10 +34,12 @@ + + @@ -79,7 +83,6 @@ Reference -
@@ -172,12 +175,7 @@

set_nd_nq() set_nd_nq_focus()

-

Set non-detects and unquantified values in residue series without replicates -This function automates replacing unquantified values in residue time and -depth series. For time series, the function performs part of the residue -processing proposed in the FOCUS kinetics guidance for parent compounds -and metabolites. For two-dimensional residue series over time and depth, -it automates the proposal of Boesten et al (2015).

+

Set non-detects and unquantified values in residue series without replicates

diff --git a/docs/reference/set_nd_nq.html b/docs/reference/set_nd_nq.html index ff751dd..9ec17ea 100644 --- a/docs/reference/set_nd_nq.html +++ b/docs/reference/set_nd_nq.html @@ -6,18 +6,15 @@ -Set non-detects and unquantified values in residue series without replicates -This function automates replacing unquantified values in residue time and -depth series. For time series, the function performs part of the residue -processing proposed in the FOCUS kinetics guidance for parent compounds -and metabolites. For two-dimensional residue series over time and depth, -it automates the proposal of Boesten et al (2015). — set_nd_nq • pfm +Set non-detects and unquantified values in residue series without replicates — set_nd_nq • pfm + + @@ -37,15 +34,9 @@ it automates the proposal of Boesten et al (2015). — set_nd_nq • pfm - - + + @@ -97,7 +89,6 @@ it automates the proposal of Boesten et al (2015)." /> Reference -
@@ -113,32 +104,24 @@ it automates the proposal of Boesten et al (2015)." />
-

Set non-detects and unquantified values in residue series without replicates -This function automates replacing unquantified values in residue time and -depth series. For time series, the function performs part of the residue -processing proposed in the FOCUS kinetics guidance for parent compounds -and metabolites. For two-dimensional residue series over time and depth, -it automates the proposal of Boesten et al (2015).

+

Set non-detects and unquantified values in residue series without replicates

- -

Set non-detects and unquantified values in residue series without replicates -This function automates replacing unquantified values in residue time and +

This function automates replacing unquantified values in residue time and depth series. For time series, the function performs part of the residue processing proposed in the FOCUS kinetics guidance for parent compounds and metabolites. For two-dimensional residue series over time and depth, it automates the proposal of Boesten et al (2015).

- 
set_nd_nq(res_raw, lod, loq = NA, time_zero_presence = FALSE)
 
 set_nd_nq_focus(res_raw, lod, loq = NA, set_first_sample_nd = TRUE,
   first_sample_nd_value = 0, ignore_below_loq_after_first_nd = TRUE)
- +

Arguments

@@ -182,18 +165,16 @@ in case it is a non-detection?

non-detection that occurs after the quantified values?

- +

Value

A numeric vector, if a vector was supplied, or a numeric matrix otherwise

-

Functions

  • set_nd_nq_focus: Set non-detects in residue time series according to FOCUS rules

-

References

Boesten, J. J. T. I., van der Linden, A. M. A., Beltman, W. H. @@ -204,7 +185,6 @@ Wageningen UR (University & Research centre)

FOCUS (2014) Generic Guidance for Estimating Persistence and Degradation Kinetics from Environmental Fate Studies on Pesticides in EU Registration, Version 1.1, 18 December 2014, p. 251

-

Examples

# FOCUS (2014) p. 75/76 and 131/132
@@ -249,13 +229,9 @@ Wageningen UR (University & Research centre)

     
Contents

     
 
diff --git a/man/set_nd_nq.Rd b/man/set_nd_nq.Rd
index b2da429..47b7e33 100644
--- a/man/set_nd_nq.Rd
+++ b/man/set_nd_nq.Rd
@@ -3,12 +3,7 @@
 \name{set_nd_nq}
 \alias{set_nd_nq}
 \alias{set_nd_nq_focus}
-\title{Set non-detects and unquantified values in residue series without replicates
-This function automates replacing unquantified values in residue time and
-depth series. For time series, the function performs part of the residue
-processing proposed in the FOCUS kinetics guidance for parent compounds
-and metabolites. For two-dimensional residue series over time and depth,
-it automates the proposal of Boesten et al (2015).}
+\title{Set non-detects and unquantified values in residue series without replicates}
 \usage{
 set_nd_nq(res_raw, lod, loq = NA, time_zero_presence = FALSE)
 
@@ -45,7 +40,6 @@ non-detection that occurs after the quantified values?}
 A numeric vector, if a vector was supplied, or a numeric matrix otherwise
 }
 \description{
-Set non-detects and unquantified values in residue series without replicates
 This function automates replacing unquantified values in residue time and
 depth series. For time series, the function performs part of the residue
 processing proposed in the FOCUS kinetics guidance for parent compounds
-- 
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