From 3652dd9b49d8f86ff99790a977697489e6033bab Mon Sep 17 00:00:00 2001 From: Ranke Johannes Date: Thu, 28 Nov 2024 11:40:02 +0100 Subject: Remove README.html to simplify maintenance It was only used on cgit.jrwb.de anyways. --- .Rbuildignore | 1 - GNUmakefile | 4 - R/endpoint.R | 2 +- README.html | 477 ---------------------------------------------------------- 4 files changed, 1 insertion(+), 483 deletions(-) delete mode 100644 README.html diff --git a/.Rbuildignore b/.Rbuildignore index 31af7d1..039486c 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -2,7 +2,6 @@ ^pfm_.*.zip ^pfm.Rcheck$ ^GNUmakefile$ -^README.html$ ^log ^test.R$ ^pesticide.txt$ diff --git a/GNUmakefile b/GNUmakefile index b5ae886..8348372 100644 --- a/GNUmakefile +++ b/GNUmakefile @@ -13,7 +13,6 @@ pkgfiles = \ GNUmakefile \ inst/data_generation/* \ inst/testdata/* \ - README.html \ R/* \ tests/testthat.R \ tests/testthat/* @@ -23,9 +22,6 @@ all: build roxy: Rscript -e "roxygen2::roxygenize(roclets = c('rd', 'collate', 'namespace'))" -README.html: README.md - "$(RBIN)/Rscript" -e "rmarkdown::render('README.md', output_format = 'html_document', output_options = list(mathjax = NULL))" - $(TGZ): $(pkgfiles) "$(RBIN)/R" CMD build . 2>&1 | tee log/build.log diff --git a/R/endpoint.R b/R/endpoint.R index 08856f9..5415d84 100644 --- a/R/endpoint.R +++ b/R/endpoint.R @@ -41,7 +41,7 @@ endpoint <- function(chent, signif = 3) { if (!is(chent, "chent")) { - stop("Please supply a chent object as created using the package 'chents' available from jrwb.de") + stop("Please supply a chent object as created using the package 'chents' available from github") } ep_list <- chent$chyaml[[medium]][[type]] if (!is.na(lab_field[1])) { diff --git a/README.html b/README.html deleted file mode 100644 index 50fd426..0000000 --- a/README.html +++ /dev/null @@ -1,477 +0,0 @@ - - - - - - - - - - - - - -README - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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pfm

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pfm status badge buildbuildpassingpassing - - - - - - - - - - - - - - codecov - codecov - 67% - 67% - - - -

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The R package pfm provides some utilities for fate -modelling, including dealing with FOCUS pesticide fate modelling tools, -(currently only TOXSWA cwa and out files), made available under the GNU -public license.

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Installation

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The easiest way to install the package is probably to use the r-universe repo:

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install.packages("pfm", repos = c("https://jranke.r-universe.dev", "https://cran.r-project.org"))
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Alternatively you can install the package using the -remotes package. Using quick = TRUE skips -docs, multiple-architecture builds, demos, and vignettes.

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remotes::install_github("jranke/pfm", quick = TRUE)
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Use

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Please refer to the reference.

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Examples

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One recent nice example of the usage of this package is the -visualisation of a time weighted average for a sawtooth curve obtained -from several overlays of mkinfit predictions as shown here.

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Applications

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Calculations of predicted environmental concentrations using this -package have been used in some publications by Agroscope.

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-Korkaric M, Lehto M, Poiger T, de Baan L, Mathis M, Ammann L, Hanke I, -Balmer M, Blom JF (2023) Risikoindikatoren für Pflanzenschutzmittel: -weiterführende Analysen zur Berechnung. Agroscope Science, 154, 1-48, -doi:10.34776/as154g -
-Korkaric M, Ammann L, Hanke I, Schneuwly J, Lehto M, Poiger T, de Baan -L, Daniel O, Blom JF (2022) Neue Pflanzenschutzmittel-Risikoindikatoren -für die Schweiz. Agrarforschung Schweiz 13, 1-10, -doi:10.34776/afs13-1 -
-Korkaric M, Hanke I, Grossar D, Neuweiler R, Christ B, Wirth J, -Hochstrasser M, Dubuis PH, Kuster T, Breitenmoser S, Egger B, Perren S, -Schürch S, Aldrich A, Jeker L, Poiger T, Daniel O (2020) Datengrundlage -und Kriterien für eine Einschränkung der PSM-Auswahl im ÖLN: Schutz der -Oberflächengewässer, der Bienen und des Grundwassers (Metaboliten), -sowie agronomische Folgen der Einschränkungen. Agroscope Science, 106, -2020, 1-31. -doi:10.34776/as106g -
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