From f4e35b0bf9c4de0b5c6235f5cf9e284faf40569f Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 19 Nov 2021 00:17:33 +0100 Subject: Update docs and logs --- ChangeLog | 21 ++++++++++++++++++++ DESCRIPTION | 4 ++-- build.log | 6 +++++- man/perc_runoff_reduction_exposit.Rd | 2 +- test.log | 38 +++++++++++++++++------------------- 5 files changed, 47 insertions(+), 24 deletions(-) diff --git a/ChangeLog b/ChangeLog index 6767e33..23ac2c6 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,24 @@ +commit 6e3917d814500d5af43702b4d4be1e44cefc00d4 +Author: Johannes Ranke +Date: 2021-11-18 11:22:44 +0100 + + Update README after changing default branch to main + +commit e0029129aec8b92d58aea8552006002c5fe409f5 +Author: Johannes Ranke +Date: 2021-02-10 09:29:33 +0100 + + Treat Kfoc = 0 like Exposit in runoff calcs + +commit c97a4f5a9fe30ffc3321681a97eea167cfc427b5 +Author: Johannes Ranke +Date: 2020-07-23 12:22:25 +0200 + + PEC_sw_drift: Rautmann formula (1 app, Ackerbau) + + This makes it possible to calculate drift PECsw for other distances than + present in the JKI data or the Rautmann paper. + commit 90fa42c86596c85168931148bf8d5fa014fa7794 Author: Johannes Ranke Date: 2020-07-23 10:51:39 +0200 diff --git a/DESCRIPTION b/DESCRIPTION index ef5c7a9..bb7e74d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -2,7 +2,7 @@ Package: pfm Type: Package Title: Utilities for Pesticide Fate Modelling Version: 0.5.8 -Date: 2020-07-23 +Date: 2021-11-19 Authors@R: person("Johannes Ranke", email = "jranke@uni-bremen.de", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0003-4371-6538")) @@ -32,4 +32,4 @@ LazyLoad: yes LazyData: yes Encoding: UTF-8 URL: https://pkgdown.jrwb.de/pfm -RoxygenNote: 7.1.1 +RoxygenNote: 7.1.2 diff --git a/build.log b/build.log index 5dccfd7..7046cc0 100644 --- a/build.log +++ b/build.log @@ -7,6 +7,10 @@ Removed empty directory ‘pfm/inst/testdata/SwashProjects/Project_1/MACRO’ Removed empty directory ‘pfm/inst/testdata/SwashProjects/Project_1’ Removed empty directory ‘pfm/inst/testdata/SwashProjects’ NB: this package now depends on R (>= 3.5.0) - WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: ‘pfm/data/EFSA_GW_interception_2014.RData’ WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: ‘pfm/data/EFSA_washoff_2017.RData’ + WARNING: Added dependency on R >= 3.5.0 because serialized objects in + serialize/load version 3 cannot be read in older versions of R. + File(s) containing such objects: + ‘pfm/data/EFSA_GW_interception_2014.RData’ + ‘pfm/data/EFSA_washoff_2017.RData’ * building ‘pfm_0.5.8.tar.gz’ diff --git a/man/perc_runoff_reduction_exposit.Rd b/man/perc_runoff_reduction_exposit.Rd index 0aa50c1..93016b7 100644 --- a/man/perc_runoff_reduction_exposit.Rd +++ b/man/perc_runoff_reduction_exposit.Rd @@ -17,7 +17,7 @@ from which the values were taken. \source{ Excel 3.02 spreadsheet available from \url{https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html} - + Agroscope version 3.01a with additional runoff factors for 3 m and 6 m buffer zones received from Muris Korkaric (not published). The variant 3.01a2 was introduced for consistency with previous calculations performed by Agroscope for a 3 m buffer zone. } diff --git a/test.log b/test.log index 07617f9..3ee18e1 100644 --- a/test.log +++ b/test.log @@ -1,25 +1,23 @@ -Loading pfm +ℹ Loading pfm Loading required package: R6 Loading required package: mkin -Testing pfm -✔ | OK F W S | Context -✔ | 1 | Simple PEC sediment calculations -✔ | 17 | Simple PEC soil calculations [0.2 s] -✔ | 6 | Simple PEC surface water calculations with drift entry -✔ | 1 | Actual and time weighted average concentrations for SFO kinetics -✔ | 7 | Read and analyse TOXSWA cwa files [6.0 s] -✔ | 12 | UK drainage PEC calculations -✔ | 7 | Exposit calculations -✔ | 6 | Geometric mean calculation -✔ | 1 | Check max_twa for parent mkinfit models against analytical solutions [0.9 s] -✔ | 11 | Processing of residue series -✔ | 9 | FOCUS Step 1 calculations [0.1 s] -✔ | 8 | FOCUS Steps 12 input files +Loading required package: parallel +ℹ Testing pfm +✔ | F W S OK | Context +✔ | 7 | Exposit calculations [0.1s] +✔ | 6 | Geometric mean calculation +✔ | 1 | Check max_twa for parent mkinfit models against analytical solutions [0.8s] +✔ | 1 | Simple PEC sediment calculations +✔ | 17 | Simple PEC soil calculations [0.2s] +✔ | 6 | Simple PEC surface water calculations with drift entry +✔ | 11 | Processing of residue series +✔ | 1 | Actual and time weighted average concentrations for SFO kinetics +✔ | 9 | FOCUS Step 1 calculations [0.1s] +✔ | 8 | FOCUS Steps 12 input files +✔ | 7 | Read and analyse TOXSWA cwa files [5.8s] +✔ | 12 | UK drainage PEC calculations ══ Results ═════════════════════════════════════════════════════════════════════════════════════════ -Duration: 7.5 s +Duration: 7.3 s -OK: 86 -Failed: 0 -Warnings: 0 -Skipped: 0 +[ FAIL 0 | WARN 0 | SKIP 0 | PASS 86 ] -- cgit v1.2.1