From f67ea0c4aeb68631e9f93c95e86c14364718477a Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 31 Jan 2017 07:33:21 +0100
Subject: Small documentation fix

---
 ChangeLog                      | 12 ++++++++++++
 R/PELMO_runs.R                 |  2 +-
 docs/reference/PELMO_runs.html |  4 ++--
 man/PELMO_runs.Rd              |  2 +-
 4 files changed, 16 insertions(+), 4 deletions(-)

diff --git a/ChangeLog b/ChangeLog
index 9cb0481..ff03ccb 100644
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,15 @@
+commit 4e696997516543e29119e94d67283f513be4484d
+Author: Johannes Ranke <jranke@uni-bremen.de>
+Date:   2017-01-30 18:08:50 +0100
+
+    Regenerate static documentation
+
+commit 03bda75d343402dad99df2aad55611e11279b833
+Author: Johannes Ranke <jranke@uni-bremen.de>
+Date:   2017-01-30 18:04:53 +0100
+
+    Correct psm file in the example with metabolites
+
 commit 39d202b0a0f833c756bc98fb4961483de1b15353
 Author: Johannes Ranke <jranke@uni-bremen.de>
 Date:   2017-01-30 16:14:15 +0100
diff --git a/R/PELMO_runs.R b/R/PELMO_runs.R
index e5a78ff..0f134e0 100644
--- a/R/PELMO_runs.R
+++ b/R/PELMO_runs.R
@@ -25,7 +25,7 @@
 #' @param execute Should PELMO be executed directly?
 #' @param cores The number of cores to execute PELMO runs in parallel
 #' @param evaluate Should the results be returned?
-#' @param overwrite Should an existing run directories be overwritten
+#' @param overwrite Should existing run directories be overwritten?
 #' @references PELMO.installeR \url{https://jranke.github.io/PELMO.installeR}
 #'
 #' Wine \url{https://winehq.org}
diff --git a/docs/reference/PELMO_runs.html b/docs/reference/PELMO_runs.html
index 1e2cc8e..23a7a30 100644
--- a/docs/reference/PELMO_runs.html
+++ b/docs/reference/PELMO_runs.html
@@ -109,7 +109,7 @@ as used in <code><a href='FOCUS_GW_scenarios_2012.html'>FOCUS_GW_scenarios_2012<
       <dt>evaluate</dt>
       <dd>Should the results be returned?</dd>
       <dt>overwrite</dt>
-      <dd>Should an existing run directories be overwritten</dd>
+      <dd>Should existing run directories be overwritten?</dd>
     </dl>
     
     <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
@@ -171,7 +171,7 @@ the period.plm file generated by the FOCUS PELMO GUI.</p>
 #&gt; 
 #&gt; </div><div class='input'><span class='co'># We get exactly the same PECgw values (on Linux, calling PELMO using Wine).</span>
 <span class='fu'>print</span>(<span class='no'>time_1</span>)</div><div class='output co'>#&gt;        User      System verstrichen 
-#&gt;     231.948       0.568      56.887 </div><div class='input'>
+#&gt;     228.532       0.540      57.195 </div><div class='input'>
 <span class='co'># Demonstrate some results with metabolites.</span>
 <span class='no'>runs_2</span> <span class='kw'>&lt;-</span> <span class='fu'>list</span>(<span class='fu'>list</span>(<span class='kw'>psm</span> <span class='kw'>=</span> <span class='st'>'Pesticide_D_1_May_every_other_year_mets'</span>,
                     <span class='kw'>win</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"Cha"</span>, <span class='st'>"Ham"</span>, <span class='st'>"Kre"</span>)))
diff --git a/man/PELMO_runs.Rd b/man/PELMO_runs.Rd
index ce5c7af..aa02a89 100644
--- a/man/PELMO_runs.Rd
+++ b/man/PELMO_runs.Rd
@@ -34,7 +34,7 @@ as used in \code{\link{FOCUS_GW_scenarios_2012}}.}
 
 \item{evaluate}{Should the results be returned?}
 
-\item{overwrite}{Should an existing run directories be overwritten}
+\item{overwrite}{Should existing run directories be overwritten?}
 }
 \value{
 If evaluate is TRUE, a list of lists of matrices holding the
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