From d66bd4aa0bf9c4d9b8793a4e308c9e80691b440f Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sun, 12 Nov 2023 21:40:01 +0100 Subject: Enable links to source, upgrade to bootstrap 5 --- docs/reference/FOCUS_Step_12_scenarios.html | 507 ++++++++++++---------------- 1 file changed, 219 insertions(+), 288 deletions(-) (limited to 'docs/reference/FOCUS_Step_12_scenarios.html') diff --git a/docs/reference/FOCUS_Step_12_scenarios.html b/docs/reference/FOCUS_Step_12_scenarios.html index bbfb592..dc1e4c3 100644 --- a/docs/reference/FOCUS_Step_12_scenarios.html +++ b/docs/reference/FOCUS_Step_12_scenarios.html @@ -1,324 +1,255 @@ - - - - - - - -Step 1/2 scenario data as distributed with the FOCUS Step 1/2 calculator — FOCUS_Step_12_scenarios • pfm - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -Step 1/2 scenario data as distributed with the FOCUS Step 1/2 calculator — FOCUS_Step_12_scenarios • pfm + + Skip to contents + +
+
+
+

Step 1/2 scenario data as distributed with the FOCUS Step 1/2 calculator

+ Source: R/FOCUS_Step_12_scenarios.R +
FOCUS_Step_12_scenarios.Rd
-
+

The data were extracted from the scenario.txt file using the R code shown below. The text file is not included in the package as its licence is not clear.

- -

Format

- +
+

Format

A list containing the scenario names in a character vector called 'names', the drift percentiles in a matrix called 'drift', interception percentages in a matrix called 'interception' and the runoff/drainage percentages for Step 2 calculations in a matrix called 'rd'.

+
-

Examples

- 

-if (FALSE) {
-  # This is the code that was used to extract the data
-  scenario_path <- "inst/extdata/FOCUS_Step_12_scenarios.txt"
-  scenarios <- readLines(scenario_path)[9:38]
-  FOCUS_Step_12_scenarios <- list()
-  sce <- read.table(text = scenarios, sep = "\t", header = TRUE, check.names = FALSE,
-    stringsAsFactors = FALSE)
-  FOCUS_Step_12_scenarios$names = sce$Crop
-  rownames(sce) <- sce$Crop
-  FOCUS_Step_12_scenarios$drift = sce[, 3:11]
-  FOCUS_Step_12_scenarios$interception = sce[, 12:15]
-  sce_2 <- readLines(scenario_path)[41:46]
-  rd <- read.table(text = sce_2, sep = "\t")[1:2]
-  rd_mat <- matrix(rd$V2, nrow = 3, byrow = FALSE)
-  dimnames(rd_mat) = list(Time = c("Oct-Feb", "Mar-May", "Jun-Sep"),
-                          Region = c("North", "South"))
-  FOCUS_Step_12_scenarios$rd = rd_mat
-  save(FOCUS_Step_12_scenarios, file = "data/FOCUS_Step_12_scenarios.RData")
-}
-
-# And this is the resulting data
-FOCUS_Step_12_scenarios
#> $names
-#>  [1] "cereals, spring"                  "cereals, winter"                 
-#>  [3] "citrus"                           "cotton"                          
-#>  [5] "field beans"                      "grass / alfalfa"                 
-#>  [7] "hops"                             "legumes"                         
-#>  [9] "maize"                            "oil seed rape, spring"           
-#> [11] "oil seed rape, winter"            "olives"                          
-#> [13] "pome / stone fruit, early applns" "pome / stone fruit, late applns" 
-#> [15] "potatoes"                         "soybeans"                        
-#> [17] "sugar beets"                      "sunflowers"                      
-#> [19] "tobacco"                          "vegetables, bulb"                
-#> [21] "vegetables, fruiting"             "vegetables, leafy"               
-#> [23] "vegetables, root"                 "vines, early applns"             
-#> [25] "vines, late applns"               "appln, aerial"                   
-#> [27] "appln, hand (crop < 50 cm)"       "appln, hand (crop > 50 cm)"      
-#> [29] "no drift (incorp or seed trtmt)" 
-#> 
-#> $drift
-#>                                       1      2      3      4      5      6
-#> cereals, spring                   2.759  2.438  2.024  1.862  1.794  1.631
-#> cereals, winter                   2.759  2.438  2.024  1.862  1.794  1.631
-#> citrus                           15.725 12.129 11.011 10.124  9.743  9.204
-#> cotton                            2.759  2.438  2.024  1.862  1.794  1.631
-#> field beans                       2.759  2.438  2.024  1.862  1.794  1.631
-#> grass / alfalfa                   2.759  2.438  2.024  1.862  1.794  1.631
-#> hops                             19.326 17.723 15.928 15.378 15.114 14.902
-#> legumes                           2.759  2.438  2.024  1.862  1.794  1.631
-#> maize                             2.759  2.438  2.024  1.862  1.794  1.631
-#> oil seed rape, spring             2.759  2.438  2.024  1.862  1.794  1.631
-#> oil seed rape, winter             2.759  2.438  2.024  1.862  1.794  1.631
-#> olives                           15.725 12.129 11.011 10.124  9.743  9.204
-#> pome / stone fruit, early applns 29.197 25.531 23.960 23.603 23.116 22.760
-#> pome / stone fruit, late applns  15.725 12.129 11.011 10.124  9.743  9.204
-#> potatoes                          2.759  2.438  2.024  1.862  1.794  1.631
-#> soybeans                          2.759  2.438  2.024  1.862  1.794  1.631
-#> sugar beets                       2.759  2.438  2.024  1.862  1.794  1.631
-#> sunflowers                        2.759  2.438  2.024  1.862  1.794  1.631
-#> tobacco                           2.759  2.438  2.024  1.862  1.794  1.631
-#> vegetables, bulb                  2.759  2.438  2.024  1.862  1.794  1.631
-#> vegetables, fruiting              2.759  2.438  2.024  1.862  1.794  1.631
-#> vegetables, leafy                 2.759  2.438  2.024  1.862  1.794  1.631
-#> vegetables, root                  2.759  2.438  2.024  1.862  1.794  1.631
-#> vines, early applns               2.699  2.496  2.546  2.499  2.398  2.336
-#> vines, late applns                8.028  7.119  6.898  6.631  6.636  6.431
-#> appln, aerial                    33.200 33.200 33.200 33.200 33.200 33.200
-#> appln, hand (crop < 50 cm)        2.759  2.438  2.024  1.862  1.794  1.631
-#> appln, hand (crop > 50 cm)        8.028  7.119  6.898  6.631  6.636  6.431
-#> no drift (incorp or seed trtmt)   0.000  0.000  0.000  0.000  0.000  0.000
-#>                                       7      8     >8
-#> cereals, spring                   1.578  1.512  1.512
-#> cereals, winter                   1.578  1.512  1.512
-#> citrus                            9.102  8.656  8.656
-#> cotton                            1.578  1.512  1.512
-#> field beans                       1.578  1.512  1.512
-#> grass / alfalfa                   1.578  1.512  1.512
-#> hops                             14.628 13.520 13.520
-#> legumes                           1.578  1.512  1.512
-#> maize                             1.578  1.512  1.512
-#> oil seed rape, spring             1.578  1.512  1.512
-#> oil seed rape, winter             1.578  1.512  1.512
-#> olives                            9.102  8.656  8.656
-#> pome / stone fruit, early applns 22.690 22.241 22.241
-#> pome / stone fruit, late applns   9.102  8.656  8.656
-#> potatoes                          1.578  1.512  1.512
-#> soybeans                          1.578  1.512  1.512
-#> sugar beets                       1.578  1.512  1.512
-#> sunflowers                        1.578  1.512  1.512
-#> tobacco                           1.578  1.512  1.512
-#> vegetables, bulb                  1.578  1.512  1.512
-#> vegetables, fruiting              1.578  1.512  1.512
-#> vegetables, leafy                 1.578  1.512  1.512
-#> vegetables, root                  1.578  1.512  1.512
-#> vines, early applns               2.283  2.265  2.265
-#> vines, late applns                6.227  6.173  6.173
-#> appln, aerial                    33.200 33.200 33.200
-#> appln, hand (crop < 50 cm)        1.578  1.512  1.512
-#> appln, hand (crop > 50 cm)        6.227  6.173  6.173
-#> no drift (incorp or seed trtmt)   0.000  0.000  0.000
-#> 
-#> $interception
-#>                                  no interception minimal crop cover
-#> cereals, spring                                0               0.00
-#> cereals, winter                                0               0.00
-#> citrus                                         0               0.80
-#> cotton                                         0               0.30
-#> field beans                                    0               0.25
-#> grass / alfalfa                                0               0.40
-#> hops                                           0               0.20
-#> legumes                                        0               0.25
-#> maize                                          0               0.25
-#> oil seed rape, spring                          0               0.40
-#> oil seed rape, winter                          0               0.40
-#> olives                                         0               0.70
-#> pome / stone fruit, early applns               0               0.20
-#> pome / stone fruit, late applns                0               0.20
-#> potatoes                                       0               0.15
-#> soybeans                                       0               0.20
-#> sugar beets                                    0               0.20
-#> sunflowers                                     0               0.20
-#> tobacco                                        0               0.20
-#> vegetables, bulb                               0               0.10
-#> vegetables, fruiting                           0               0.25
-#> vegetables, leafy                              0               0.25
-#> vegetables, root                               0               0.25
-#> vines, early applns                            0               0.40
-#> vines, late applns                             0               0.40
-#> appln, aerial                                  0               0.20
-#> appln, hand (crop < 50 cm)                     0               0.20
-#> appln, hand (crop > 50 cm)                     0               0.20
-#> no drift (incorp or seed trtmt)                0               0.00
-#>                                  average crop cover full canopy
-#> cereals, spring                                0.20        0.70
-#> cereals, winter                                0.20        0.70
-#> citrus                                         0.80        0.80
-#> cotton                                         0.60        0.75
-#> field beans                                    0.40        0.70
-#> grass / alfalfa                                0.60        0.75
-#> hops                                           0.50        0.70
-#> legumes                                        0.50        0.70
-#> maize                                          0.50        0.75
-#> oil seed rape, spring                          0.70        0.75
-#> oil seed rape, winter                          0.70        0.75
-#> olives                                         0.70        0.70
-#> pome / stone fruit, early applns               0.40        0.65
-#> pome / stone fruit, late applns                0.40        0.65
-#> potatoes                                       0.50        0.70
-#> soybeans                                       0.50        0.75
-#> sugar beets                                    0.70        0.75
-#> sunflowers                                     0.50        0.75
-#> tobacco                                        0.70        0.75
-#> vegetables, bulb                               0.25        0.40
-#> vegetables, fruiting                           0.50        0.70
-#> vegetables, leafy                              0.40        0.70
-#> vegetables, root                               0.50        0.70
-#> vines, early applns                            0.50        0.60
-#> vines, late applns                             0.50        0.60
-#> appln, aerial                                  0.50        0.70
-#> appln, hand (crop < 50 cm)                     0.50        0.70
-#> appln, hand (crop > 50 cm)                     0.50        0.70
-#> no drift (incorp or seed trtmt)                0.00        0.00
-#> 
-#> $rd
-#>          Region
-#> Time      North South
-#>   Oct-Feb     5     4
-#>   Mar-May     2     4
-#>   Jun-Sep     2     3
-#>
-
- -
+
+

Examples

+ 

+if (FALSE) {
+  # This is the code that was used to extract the data
+  scenario_path <- "inst/extdata/FOCUS_Step_12_scenarios.txt"
+  scenarios <- readLines(scenario_path)[9:38]
+  FOCUS_Step_12_scenarios <- list()
+  sce <- read.table(text = scenarios, sep = "\t", header = TRUE, check.names = FALSE,
+    stringsAsFactors = FALSE)
+  FOCUS_Step_12_scenarios$names = sce$Crop
+  rownames(sce) <- sce$Crop
+  FOCUS_Step_12_scenarios$drift = sce[, 3:11]
+  FOCUS_Step_12_scenarios$interception = sce[, 12:15]
+  sce_2 <- readLines(scenario_path)[41:46]
+  rd <- read.table(text = sce_2, sep = "\t")[1:2]
+  rd_mat <- matrix(rd$V2, nrow = 3, byrow = FALSE)
+  dimnames(rd_mat) = list(Time = c("Oct-Feb", "Mar-May", "Jun-Sep"),
+                          Region = c("North", "South"))
+  FOCUS_Step_12_scenarios$rd = rd_mat
+  save(FOCUS_Step_12_scenarios, file = "data/FOCUS_Step_12_scenarios.RData")
+}
+
+# And this is the resulting data
+FOCUS_Step_12_scenarios
+#> $names
+#>  [1] "cereals, spring"                  "cereals, winter"                 
+#>  [3] "citrus"                           "cotton"                          
+#>  [5] "field beans"                      "grass / alfalfa"                 
+#>  [7] "hops"                             "legumes"                         
+#>  [9] "maize"                            "oil seed rape, spring"           
+#> [11] "oil seed rape, winter"            "olives"                          
+#> [13] "pome / stone fruit, early applns" "pome / stone fruit, late applns" 
+#> [15] "potatoes"                         "soybeans"                        
+#> [17] "sugar beets"                      "sunflowers"                      
+#> [19] "tobacco"                          "vegetables, bulb"                
+#> [21] "vegetables, fruiting"             "vegetables, leafy"               
+#> [23] "vegetables, root"                 "vines, early applns"             
+#> [25] "vines, late applns"               "appln, aerial"                   
+#> [27] "appln, hand (crop < 50 cm)"       "appln, hand (crop > 50 cm)"      
+#> [29] "no drift (incorp or seed trtmt)" 
+#> 
+#> $drift
+#>                                       1      2      3      4      5      6
+#> cereals, spring                   2.759  2.438  2.024  1.862  1.794  1.631
+#> cereals, winter                   2.759  2.438  2.024  1.862  1.794  1.631
+#> citrus                           15.725 12.129 11.011 10.124  9.743  9.204
+#> cotton                            2.759  2.438  2.024  1.862  1.794  1.631
+#> field beans                       2.759  2.438  2.024  1.862  1.794  1.631
+#> grass / alfalfa                   2.759  2.438  2.024  1.862  1.794  1.631
+#> hops                             19.326 17.723 15.928 15.378 15.114 14.902
+#> legumes                           2.759  2.438  2.024  1.862  1.794  1.631
+#> maize                             2.759  2.438  2.024  1.862  1.794  1.631
+#> oil seed rape, spring             2.759  2.438  2.024  1.862  1.794  1.631
+#> oil seed rape, winter             2.759  2.438  2.024  1.862  1.794  1.631
+#> olives                           15.725 12.129 11.011 10.124  9.743  9.204
+#> pome / stone fruit, early applns 29.197 25.531 23.960 23.603 23.116 22.760
+#> pome / stone fruit, late applns  15.725 12.129 11.011 10.124  9.743  9.204
+#> potatoes                          2.759  2.438  2.024  1.862  1.794  1.631
+#> soybeans                          2.759  2.438  2.024  1.862  1.794  1.631
+#> sugar beets                       2.759  2.438  2.024  1.862  1.794  1.631
+#> sunflowers                        2.759  2.438  2.024  1.862  1.794  1.631
+#> tobacco                           2.759  2.438  2.024  1.862  1.794  1.631
+#> vegetables, bulb                  2.759  2.438  2.024  1.862  1.794  1.631
+#> vegetables, fruiting              2.759  2.438  2.024  1.862  1.794  1.631
+#> vegetables, leafy                 2.759  2.438  2.024  1.862  1.794  1.631
+#> vegetables, root                  2.759  2.438  2.024  1.862  1.794  1.631
+#> vines, early applns               2.699  2.496  2.546  2.499  2.398  2.336
+#> vines, late applns                8.028  7.119  6.898  6.631  6.636  6.431
+#> appln, aerial                    33.200 33.200 33.200 33.200 33.200 33.200
+#> appln, hand (crop < 50 cm)        2.759  2.438  2.024  1.862  1.794  1.631
+#> appln, hand (crop > 50 cm)        8.028  7.119  6.898  6.631  6.636  6.431
+#> no drift (incorp or seed trtmt)   0.000  0.000  0.000  0.000  0.000  0.000
+#>                                       7      8     >8
+#> cereals, spring                   1.578  1.512  1.512
+#> cereals, winter                   1.578  1.512  1.512
+#> citrus                            9.102  8.656  8.656
+#> cotton                            1.578  1.512  1.512
+#> field beans                       1.578  1.512  1.512
+#> grass / alfalfa                   1.578  1.512  1.512
+#> hops                             14.628 13.520 13.520
+#> legumes                           1.578  1.512  1.512
+#> maize                             1.578  1.512  1.512
+#> oil seed rape, spring             1.578  1.512  1.512
+#> oil seed rape, winter             1.578  1.512  1.512
+#> olives                            9.102  8.656  8.656
+#> pome / stone fruit, early applns 22.690 22.241 22.241
+#> pome / stone fruit, late applns   9.102  8.656  8.656
+#> potatoes                          1.578  1.512  1.512
+#> soybeans                          1.578  1.512  1.512
+#> sugar beets                       1.578  1.512  1.512
+#> sunflowers                        1.578  1.512  1.512
+#> tobacco                           1.578  1.512  1.512
+#> vegetables, bulb                  1.578  1.512  1.512
+#> vegetables, fruiting              1.578  1.512  1.512
+#> vegetables, leafy                 1.578  1.512  1.512
+#> vegetables, root                  1.578  1.512  1.512
+#> vines, early applns               2.283  2.265  2.265
+#> vines, late applns                6.227  6.173  6.173
+#> appln, aerial                    33.200 33.200 33.200
+#> appln, hand (crop < 50 cm)        1.578  1.512  1.512
+#> appln, hand (crop > 50 cm)        6.227  6.173  6.173
+#> no drift (incorp or seed trtmt)   0.000  0.000  0.000
+#> 
+#> $interception
+#>                                  no interception minimal crop cover
+#> cereals, spring                                0               0.00
+#> cereals, winter                                0               0.00
+#> citrus                                         0               0.80
+#> cotton                                         0               0.30
+#> field beans                                    0               0.25
+#> grass / alfalfa                                0               0.40
+#> hops                                           0               0.20
+#> legumes                                        0               0.25
+#> maize                                          0               0.25
+#> oil seed rape, spring                          0               0.40
+#> oil seed rape, winter                          0               0.40
+#> olives                                         0               0.70
+#> pome / stone fruit, early applns               0               0.20
+#> pome / stone fruit, late applns                0               0.20
+#> potatoes                                       0               0.15
+#> soybeans                                       0               0.20
+#> sugar beets                                    0               0.20
+#> sunflowers                                     0               0.20
+#> tobacco                                        0               0.20
+#> vegetables, bulb                               0               0.10
+#> vegetables, fruiting                           0               0.25
+#> vegetables, leafy                              0               0.25
+#> vegetables, root                               0               0.25
+#> vines, early applns                            0               0.40
+#> vines, late applns                             0               0.40
+#> appln, aerial                                  0               0.20
+#> appln, hand (crop < 50 cm)                     0               0.20
+#> appln, hand (crop > 50 cm)                     0               0.20
+#> no drift (incorp or seed trtmt)                0               0.00
+#>                                  average crop cover full canopy
+#> cereals, spring                                0.20        0.70
+#> cereals, winter                                0.20        0.70
+#> citrus                                         0.80        0.80
+#> cotton                                         0.60        0.75
+#> field beans                                    0.40        0.70
+#> grass / alfalfa                                0.60        0.75
+#> hops                                           0.50        0.70
+#> legumes                                        0.50        0.70
+#> maize                                          0.50        0.75
+#> oil seed rape, spring                          0.70        0.75
+#> oil seed rape, winter                          0.70        0.75
+#> olives                                         0.70        0.70
+#> pome / stone fruit, early applns               0.40        0.65
+#> pome / stone fruit, late applns                0.40        0.65
+#> potatoes                                       0.50        0.70
+#> soybeans                                       0.50        0.75
+#> sugar beets                                    0.70        0.75
+#> sunflowers                                     0.50        0.75
+#> tobacco                                        0.70        0.75
+#> vegetables, bulb                               0.25        0.40
+#> vegetables, fruiting                           0.50        0.70
+#> vegetables, leafy                              0.40        0.70
+#> vegetables, root                               0.50        0.70
+#> vines, early applns                            0.50        0.60
+#> vines, late applns                             0.50        0.60
+#> appln, aerial                                  0.50        0.70
+#> appln, hand (crop < 50 cm)                     0.50        0.70
+#> appln, hand (crop > 50 cm)                     0.50        0.70
+#> no drift (incorp or seed trtmt)                0.00        0.00
+#> 
+#> $rd
+#>          Region
+#> Time      North South
+#>   Oct-Feb     5     4
+#>   Mar-May     2     4
+#>   Jun-Sep     2     3
+#> 
+
+
+
- + - - - + -- cgit v1.2.1 From 4079a2c496aa4e8c6dc2a93afedcbedbf7a852b5 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sun, 12 Nov 2023 21:59:34 +0100 Subject: Enable markdown and rebuild docs --- docs/reference/FOCUS_Step_12_scenarios.html | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to 'docs/reference/FOCUS_Step_12_scenarios.html') diff --git a/docs/reference/FOCUS_Step_12_scenarios.html b/docs/reference/FOCUS_Step_12_scenarios.html index dc1e4c3..bcf71ed 100644 --- a/docs/reference/FOCUS_Step_12_scenarios.html +++ b/docs/reference/FOCUS_Step_12_scenarios.html @@ -53,9 +53,9 @@ The text file is not included in the package as its licence is not clear.

Format

A list containing the scenario names in a character vector called 'names', - the drift percentiles in a matrix called 'drift', interception percentages in - a matrix called 'interception' and the runoff/drainage percentages for Step 2 - calculations in a matrix called 'rd'.

+the drift percentiles in a matrix called 'drift', interception percentages in +a matrix called 'interception' and the runoff/drainage percentages for Step 2 +calculations in a matrix called 'rd'.

-- cgit v1.2.1