From 36036b5901223591e7e21e8b73d8cd1fb034f4cb Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 16 May 2017 15:43:50 +0200 Subject: Finish the Step 1 calculator including tests Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer --- docs/reference/GUS.html | 97 +++++++++++++++++++++++++++++++------------------ 1 file changed, 62 insertions(+), 35 deletions(-) (limited to 'docs/reference/GUS.html') diff --git a/docs/reference/GUS.html b/docs/reference/GUS.html index f65c6fd..6f29e72 100644 --- a/docs/reference/GUS.html +++ b/docs/reference/GUS.html @@ -25,12 +25,14 @@ - + + + @@ -75,7 +77,7 @@ the following equation $$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$

- 
GUS(...)
+    
GUS(...)
 
 # S3 method for numeric
 GUS(DT50, Koc, ...)
@@ -89,51 +91,76 @@ $$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$

 print(x, ..., digits = 1)

     
     
 Arguments

-    

-      
...

-      
Included in the generic to allow for further arguments later. Therefore
-this also had to be added to the specific methods.

-      
DT50

-      
Half-life of the chemical in soil. Should be a field
+    
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
+      
+      
+    
+    
...
Included in the generic to allow for further arguments later. Therefore
+this also had to be added to the specific methods.
DT50
Half-life of the chemical in soil. Should be a field
 half-life according to Gustafson (1989). However, leaching to the sub-soil
 can not completely be excluded in field dissipation experiments and Gustafson
 did not refer to any normalisation procedure, but says the field study should
-be conducted under use conditions.
-      
Koc

-      
The sorption constant normalised to organic carbon. Gustafson
+be conducted under use conditions.
Koc
The sorption constant normalised to organic carbon. Gustafson
 does not mention the nonlinearity of the sorption constant commonly
 found and usually described by Freundlich sorption, therefore it is 
 unclear at which reference concentration the Koc should be observed
-(and if the reference concentration would be in soil or in porewater).
-      
chent

-      
If a chent is given with appropriate information present in its
-chyaml field, this information is used, with defaults specified below.

-      
degradation_value

-      
Which of the available degradation values should 
-be used?

-      
lab_field

-      
Should laboratory or field half-lives be used? This
+(and if the reference concentration would be in soil or in porewater).
chent
If a chent is given with appropriate information present in its
+chyaml field, this information is used, with defaults specified below.
degradation_value
Which of the available degradation values should 
+be used?
lab_field
Should laboratory or field half-lives be used? This
 defaults to lab in this implementation, in order to avoid
 double-accounting for mobility. If comparability with the original GUS
 values given by Gustafson (1989) is desired, non-normalised first-order
-field half-lives obtained under actual use conditions should be used.
-      
redox

-      
Aerobic or anaerobic degradation data

-      
sorption_value

-      
Which of the available sorption values should be used?
+field half-lives obtained under actual use conditions should be used.
redox
Aerobic or anaerobic degradation data
sorption_value
Which of the available sorption values should be used?
 Defaults to Kfoc as this is what is generally available from the European
 pesticide peer review process. These values generally use a reference
 concentration of 1 mg/L in porewater, that means they would be expected to
-be Koc values at a concentration of 1 mg/L in the water phase.
-      
degradation_aggregator

-      
Function for aggregating half-lives

-      
sorption_aggregator

-      
Function for aggregation Koc values

-      
x

-      
An object of class GUS_result to be printed

-      
digits

-      
The number of digits used in the print method

-    
+be Koc values at a concentration of 1 mg/L in the water phase.
degradation_aggregator
Function for aggregating half-lives
sorption_aggregator
Function for aggregation Koc values
x
An object of class GUS_result to be printed
digits
The number of digits used in the print method

     
     
Value

 
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