From 197606de234a936751ac3c1db2e4feb3fa117a92 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 6 Jun 2018 02:48:44 +0200 Subject: Rebuild docs with pkgdown 1.1.0 --- docs/reference/PELMO_runs.html | 39 +++++++++++++++++++++++++++++++-------- 1 file changed, 31 insertions(+), 8 deletions(-) (limited to 'docs/reference/PELMO_runs.html') diff --git a/docs/reference/PELMO_runs.html b/docs/reference/PELMO_runs.html index 1c2aabe..dc068c3 100644 --- a/docs/reference/PELMO_runs.html +++ b/docs/reference/PELMO_runs.html @@ -21,12 +21,15 @@ + + + - - - + + + + + + @@ -59,8 +65,12 @@ and run using wine." /> - pfm + + pfm + 0.4.5 + + @@ -84,12 +100,15 @@ and run using wine." /> -
+

Set up runs for FOCUS PELMO

+ Source: R/PELMO_runs.R +
+

Per default, the runs are not only set up but also executed with FOCUS PELMO, the results are processed and returned. Currently, only FOCUS PELMO @@ -99,6 +118,7 @@ maintained on github is supported. In such installations, FOCUS PELMO is installed into the package installation directory of PELMO.installeR and run using wine.

+ 
PELMO_runs(runs, psm_dir = ".", version = "5.5.3", PELMO_base = "auto",
   execute = TRUE, cores = getOption("mc.cores", 2L), evaluate = TRUE,
@@ -109,7 +129,7 @@ and run using wine.

 
 evaluate_PELMO(runs, version = "5.5.3", PELMO_base = "auto")
-

Arguments

+

Arguments

@@ -209,7 +229,7 @@ the period.plm file generated by the FOCUS PELMO GUI.

#> #>
# We get exactly the same PECgw values (on Linux, calling PELMO using Wine). print(time_1)
#> User System verstrichen -#> 220.760 1.509 30.234
if(!inherits(try(cpuinfo <- readLines("/proc/cpuinfo")), "try-error")) { +#> 0.388 0.088 30.344
if(!inherits(try(cpuinfo <- readLines("/proc/cpuinfo")), "try-error")) { cat(gsub("model name\t: ", "CPU model: ", cpuinfo[grep("model name", cpuinfo)[1]])) }
#> CPU model: AMD Ryzen 7 1700 Eight-Core Processor
# Demonstrate some results with metabolites. @@ -255,5 +275,8 @@ the period.plm file generated by the FOCUS PELMO GUI.

+ + + -- cgit v1.2.3