From d66bd4aa0bf9c4d9b8793a4e308c9e80691b440f Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sun, 12 Nov 2023 21:40:01 +0100 Subject: Enable links to source, upgrade to bootstrap 5 --- docs/reference/TSCF.html | 213 +++++++++++++++++------------------------------ 1 file changed, 77 insertions(+), 136 deletions(-) (limited to 'docs/reference/TSCF.html') diff --git a/docs/reference/TSCF.html b/docs/reference/TSCF.html index b635ba2..eb1398b 100644 --- a/docs/reference/TSCF.html +++ b/docs/reference/TSCF.html @@ -1,119 +1,58 @@ - - - - - - - -Estimation of the transpiration stream concentration factor — TSCF • pfm - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - +or ionic.">Estimation of the transpiration stream concentration factor — TSCF • pfm + Skip to contents + +
+
+
+

Estimation of the transpiration stream concentration factor

+ Source: R/TSCF.R +
TSCF.Rd
-
+

The FOCUS groundwater guidance (FOCUS 2014, p. 41) states that a reliable measured log Kow for neutral pH must be available in order to apply the Briggs equation. It is not clarified when it can be regarded reliable, but the @@ -122,60 +61,62 @@ the compound should not be ionogenic (weak acid/base) or ionic.

- 
TSCF(log_Kow, method = c("briggs82", "dettenmaier09"))
+
+

Usage

+ 
TSCF(log_Kow, method = c("briggs82", "dettenmaier09"))
+
-

Arguments

- - - - - - - - - - -
log_Kow

The decadic logarithm of the octanol-water partition constant

method

Short name of the estimation method.

+
+

Arguments

+
log_Kow
+

The decadic logarithm of the octanol-water partition constant

-

Details

-

The Dettenmaier equation is given to show that other views on the subject exist.

-

References

+
method
+

Short name of the estimation method.

+
+
+

Details

+

The Dettenmaier equation is given to show that other views on the subject exist.

+
+
+

References

FOCUS (2014) Generic Guidance for Tier 1 FOCUS Ground Water Assessments. Version 2.2, May 2014 Dettenmaier EM, Doucette WJ and Bugbee B (2009) Chemical hydrophobicity and uptake by plant roots. Environ. Sci. Technol 43, 324 - 329

+
-

Examples

- 
plot(TSCF, -1, 5, xlab = "log Kow", ylab = "TSCF", ylim = c(0, 1.1))
TSCF_2 <- function(x) TSCF(x, method = "dettenmaier09")
-curve(TSCF_2, -1, 5, add = TRUE, lty = 2)
legend("topright", lty = 1:2, bty = "n",
-  legend = c("Briggs et al. (1982)", "Dettenmaier et al. (2009)"))
-
- -
+
+

Examples

+ 
plot(TSCF, -1, 5, xlab = "log Kow", ylab = "TSCF", ylim = c(0, 1.1))
+
+TSCF_2 <- function(x) TSCF(x, method = "dettenmaier09")
+curve(TSCF_2, -1, 5, add = TRUE, lty = 2)
+#> Error in curve(TSCF_2, -1, 5, add = TRUE, lty = 2): could not find function "curve"
+legend("topright", lty = 1:2, bty = "n",
+  legend = c("Briggs et al. (1982)", "Dettenmaier et al. (2009)"))
+#> Error in legend("topright", lty = 1:2, bty = "n", legend = c("Briggs et al. (1982)",     "Dettenmaier et al. (2009)")): could not find function "legend"
+
+
+
- + - - - + -- cgit v1.2.3 From 4079a2c496aa4e8c6dc2a93afedcbedbf7a852b5 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sun, 12 Nov 2023 21:59:34 +0100 Subject: Enable markdown and rebuild docs --- DESCRIPTION | 1 + docs/pkgdown.yml | 2 +- docs/reference/EFSA_washoff_2017.html | 8 ++-- docs/reference/FOCUS_GW_scenarios_2012.html | 12 +++--- docs/reference/FOCUS_Step_12_scenarios.html | 6 +-- docs/reference/FOMC_actual_twa.html | 4 +- docs/reference/GUS.html | 6 +-- docs/reference/PEC_soil.html | 40 +++++++++--------- docs/reference/PEC_sw_drainage_UK.html | 10 ++--- docs/reference/PEC_sw_drift.html | 2 +- docs/reference/PEC_sw_exposit_drainage.html | 14 +++---- docs/reference/PEC_sw_exposit_runoff.html | 14 +++---- docs/reference/PEC_sw_focus.html | 28 ++++++------- docs/reference/SFO_actual_twa.html | 4 +- docs/reference/SSLRC_mobility_classification.html | 12 +++--- docs/reference/TOXSWA_cwa.html | 32 +++++++++++++-- docs/reference/TSCF-1.png | Bin 27659 -> 40587 bytes docs/reference/TSCF.html | 6 +-- docs/reference/endpoint.html | 12 +++--- docs/reference/max_twa.html | 8 ++-- docs/reference/perc_runoff_exposit.html | 14 +++---- docs/reference/perc_runoff_reduction_exposit.html | 8 ++-- docs/reference/soil_scenario_data_EFSA_2015.html | 26 ++++++------ docs/reference/soil_scenario_data_EFSA_2017.html | 26 ++++++------ docs/search.json | 2 +- man/EFSA_washoff_2017.Rd | 8 ++-- man/FOCUS_GW_scenarios_2012.Rd | 8 ++-- man/FOCUS_Step_12_scenarios.Rd | 6 +-- man/FOMC_actual_twa.Rd | 4 +- man/GUS.Rd | 6 +-- man/PEC_soil.Rd | 48 +++++++++++----------- man/PEC_sw_drainage_UK.Rd | 12 +++--- man/PEC_sw_drift.Rd | 2 +- man/PEC_sw_exposit_drainage.Rd | 14 +++---- man/PEC_sw_exposit_runoff.Rd | 14 +++---- man/PEC_sw_focus.Rd | 28 ++++++------- man/SFO_actual_twa.Rd | 4 +- man/SSLRC_mobility_classification.Rd | 14 +++---- man/TOXSWA_cwa.Rd | 6 +-- man/TSCF.Rd | 2 +- man/endpoint.Rd | 12 +++--- man/max_twa.Rd | 8 ++-- man/perc_runoff_exposit.Rd | 18 ++++---- man/perc_runoff_reduction_exposit.Rd | 14 +++---- man/soil_scenario_data_EFSA_2015.Rd | 18 ++++---- man/soil_scenario_data_EFSA_2017.Rd | 18 ++++---- 46 files changed, 290 insertions(+), 271 deletions(-) (limited to 'docs/reference/TSCF.html') diff --git a/DESCRIPTION b/DESCRIPTION index a12f90b..a159c56 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -27,4 +27,5 @@ LazyLoad: yes LazyData: yes Encoding: UTF-8 URL: https://pkgdown.jrwb.de/pfm, https://github.com/jranke/pfm +Roxygen: list(markdown = TRUE, r6 = TRUE) RoxygenNote: 7.2.3 diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index eeed6da..6571239 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -2,7 +2,7 @@ pandoc: 2.17.1.1 pkgdown: 2.0.7 pkgdown_sha: ~ articles: {} -last_built: 2023-11-12T20:34Z +last_built: 2023-11-12T20:59Z urls: reference: https://pkgdown.jrwb.de/pfm/reference article: https://pkgdown.jrwb.de/pfm/articles diff --git a/docs/reference/EFSA_washoff_2017.html b/docs/reference/EFSA_washoff_2017.html index 1e292af..b424de9 100644 --- a/docs/reference/EFSA_washoff_2017.html +++ b/docs/reference/EFSA_washoff_2017.html @@ -54,10 +54,10 @@

Source

European Food Safety Authority (2017) EFSA guidance document for - predicting environmental concentrations of active substances of plant - protection products and transformation products of these active substances - in soil. EFSA Journal 15(10) 4982 - doi:10.2903/j.efsa.2017.4982

+predicting environmental concentrations of active substances of plant +protection products and transformation products of these active substances +in soil. EFSA Journal 15(10) 4982 +doi:10.2903/j.efsa.2017.4982

diff --git a/docs/reference/FOCUS_GW_scenarios_2012.html b/docs/reference/FOCUS_GW_scenarios_2012.html index 84c2fac..2e9982b 100644 --- a/docs/reference/FOCUS_GW_scenarios_2012.html +++ b/docs/reference/FOCUS_GW_scenarios_2012.html @@ -1,6 +1,6 @@ -A very small subset of the FOCUS Groundwater scenario definitions — FOCUS_GW_scenarios_2012 • pfmA very small subset of the FOCUS Groundwater scenario definitions — FOCUS_GW_scenarios_2012 • pfmProperties of the predefined scenarios from the EFSA guidance from 2015 — soil_scenario_data_EFSA_2015 • pfmProperties of the predefined scenarios from the EFSA guidance from 2017 — soil_scenario_data_EFSA_2017 • pfmProperties of the predefined scenarios from the EFSA guidance from 2017 — soil_scenario_data_EFSA_2017 • pfm