From 197606de234a936751ac3c1db2e4feb3fa117a92 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 6 Jun 2018 02:48:44 +0200 Subject: Rebuild docs with pkgdown 1.1.0 --- docs/reference/index.html | 448 ++++++++++++++++++++++++++++------------------ 1 file changed, 274 insertions(+), 174 deletions(-) (limited to 'docs/reference/index.html') diff --git a/docs/reference/index.html b/docs/reference/index.html index 8aaa938..395b446 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -21,13 +21,19 @@ + + + - - - + + + + + + @@ -50,8 +56,12 @@ - pfm + + pfm + 0.4.5 + + @@ -75,181 +91,262 @@ -
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- Reference - version 0.4-5 -

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Reference

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General utility functions

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Functions that are independent of specific fate modelling areas

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geomean

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Calculate the geometric mean

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one_box

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Create a time series of decline data

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plot

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Plot time series of decline data

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sawtooth

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Create decline time series for multiple applications

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twa

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Calculate a time weighted average concentration

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max_twa

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The maximum time weighted average concentration for a moving window

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Predicted environmental concentrations in soil

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PEC_soil

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Calculate predicted environmental concentrations in soil

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soil_scenario_data_EFSA_2015

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Properties of the predefined scenarios from the EFSA guidance from 2015

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Predicted environmental concentrations in groundwater

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PELMO_runs run_PELMO evaluate_PELMO

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Set up runs for FOCUS PELMO

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Predicted environmental concentrations in surface water

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PEC_sw_drift

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Calculate predicted environmental concentrations in surface water due to drift

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drift_data_JKI

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Deposition from spray drift expressed as percent of the applied dose as +

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General utility functions

+

Functions that are independent of specific fate modelling areas

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+

geomean()

+

Calculate the geometric mean

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one_box()

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Create a time series of decline data

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plot(<one_box>)

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Plot time series of decline data

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sawtooth()

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Create decline time series for multiple applications

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twa()

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Calculate a time weighted average concentration

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max_twa()

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The maximum time weighted average concentration for a moving window

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pfm_degradation()

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Calculate a time course of relative concentrations based on an mkinmod model

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SFO_actual_twa()

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Actual and maximum moving window time average concentrations for SFO kinetics

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Predicted environmental concentrations in soil

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PEC_soil()

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Calculate predicted environmental concentrations in soil

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soil_scenario_data_EFSA_2015

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Properties of the predefined scenarios from the EFSA guidance from 2015

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Predicted environmental concentrations in groundwater

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FOCUS_GW_scenarios_2012

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A very small subset of the FOCUS Groundwater scenario definitions

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create_run_list()

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Create a list of runs that we can traverse

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PELMO_runs() run_PELMO() evaluate_PELMO()

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Set up runs for FOCUS PELMO

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PELMO_path()

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Create a path of run directories as the PELMO GUI does

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FOCUS_PELMO_crop_sze_names

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FOCUS PELMO crop acronyms used for naming sceneario files

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FOCUS_PELMO_crops

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FOCUS PELMO crop names

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FOCUS_PELMO_location_codes

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Location codes in FOCUS PELMO

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focus_80th()

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Calculate the 80th percentile according to FOCUS guidance

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Predicted environmental concentrations in surface water

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PEC_sw_drift()

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Calculate predicted environmental concentrations in surface water due to drift

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drift_data_JKI

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Deposition from spray drift expressed as percent of the applied dose as published by the JKI

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PEC_sw_drainage_UK

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Calculate initial predicted environmental concentrations in surface water due to drainage using the UK method

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PEC_sw_focus

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Calculate PEC surface water at FOCUS Step 1

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PEC_sw_exposit_runoff

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Calculate PEC surface water due to runoff and erosion as in Exposit 3

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TOXSWA_cwa

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R6 class for holding TOXSWA cwa concentration data and associated statistics

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read.TOXSWA_cwa

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Read TOXSWA surface water concentrations

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plot

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Plot TOXSWA surface water concentrations

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Classifications and indicators

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Evaluating environmental fate properties

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SSLRC_mobility_classification

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Determine the SSLRC mobility classification for a chemical substance from its Koc

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GUS print

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Groundwater ubiquity score based on Gustafson (1989)

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PEC_sw_drainage_UK()

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Calculate initial predicted environmental concentrations in surface water due to drainage using the UK method

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PEC_sw_sed()

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Calculate predicted environmental concentrations in sediment from surface +water concentrations

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chent_focus_sw()

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Create a chemical compound object for FOCUS Step 1 calculations

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PEC_sw_focus()

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Calculate PEC surface water at FOCUS Step 1

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FOCUS_Step_12_scenarios

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Step 1/2 scenario data as distributed with the FOCUS Step 1/2 calculator

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perc_runoff_exposit

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Runoff loss percentages as used in Exposit 3

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perc_runoff_reduction_exposit

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Runoff reduction percentages as used in Exposit

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PEC_sw_exposit_runoff()

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Calculate PEC surface water due to runoff and erosion as in Exposit 3

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TOXSWA_cwa

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R6 class for holding TOXSWA cwa concentration data and associated statistics

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read.TOXSWA_cwa()

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Read TOXSWA surface water concentrations

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plot(<TOXSWA_cwa>)

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Plot TOXSWA surface water concentrations

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Classifications and indicators

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Evaluating environmental fate properties

+ + + + + +

SSLRC_mobility_classification()

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Determine the SSLRC mobility classification for a chemical substance from its Koc

+ + + +

GUS() print(<GUS_result>)

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Groundwater ubiquity score based on Gustafson (1989)

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+ + + -- cgit v1.2.1