From 36036b5901223591e7e21e8b73d8cd1fb034f4cb Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 16 May 2017 15:43:50 +0200 Subject: Finish the Step 1 calculator including tests Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer --- docs/reference/index.html | 266 ++++++++++++++++++++++++++++------------------ 1 file changed, 163 insertions(+), 103 deletions(-) (limited to 'docs/reference/index.html') diff --git a/docs/reference/index.html b/docs/reference/index.html index 33713b6..a6ae657 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -25,12 +25,14 @@ - + + + @@ -66,113 +68,171 @@
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Function reference

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version 0.4-2

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+ Reference + version 0.4-3 +

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General utility functions

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Functions that are independent of specific fate modelling areas

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Calculate the geometric mean

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Create a time series of decline data

- - -

Plot time series of decline data

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Create decline time series for multiple applications

- - -

Calculate a time weighted average concentration

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The maximum time weighted average concentration for a moving window

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Predicted environmental concentrations in soil

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+ - -

Calculate predicted environmental concentrations in soil

- - -

Properties of the predefined scenarios from the EFSA guidance from 2015

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Predicted environmental concentrations in groundwater

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+ + + + - -

Set up runs for FOCUS PELMO

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Predicted environmental concentrations in surface water

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- - -

Calculate predicted environmental concentrations in surface water due to drift

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Deposition from spray drift expressed as percent of the applied dose as -

- - -

Calculate initial predicted environmental concentrations in surface water due to drainage using the UK method

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R6 class for holding TOXSWA cwa concentration data and associated statistics

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Read TOXSWA surface water concentrations

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Plot TOXSWA surface water concentrations

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Classifications and indicators

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Evaluating environmental fate properties

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Determine the SSLRC mobility classification for a chemical substance from its Koc

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Groundwater ubiquity score based on Gustafson (1989)

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+

General utility functions

+

Functions that are independent of specific fate modelling areas

+
+

geomean

+

Calculate the geometric mean

+

one_box

+

Create a time series of decline data

+

plot

+

Plot time series of decline data

+

sawtooth

+

Create decline time series for multiple applications

+

twa

+

Calculate a time weighted average concentration

+

max_twa

+

The maximum time weighted average concentration for a moving window

+

Predicted environmental concentrations in soil

+

+
+

PEC_soil

+

Calculate predicted environmental concentrations in soil

+

soil_scenario_data_EFSA_2015

+

Properties of the predefined scenarios from the EFSA guidance from 2015

+

Predicted environmental concentrations in groundwater

+

+
+

PELMO_runs run_PELMO evaluate_PELMO

+

Set up runs for FOCUS PELMO

+

Predicted environmental concentrations in surface water

+

+
+

PEC_sw_drift

+

Calculate predicted environmental concentrations in surface water due to drift

+

drift_data_JKI

+

Deposition from spray drift expressed as percent of the applied dose as +published by the JKI

+

PEC_sw_drainage_UK

+

Calculate initial predicted environmental concentrations in surface water due to drainage using the UK method

+

PEC_sw_focus

+

Calculate FOCUS Step 1 PEC surface water

+

TOXSWA_cwa

+

R6 class for holding TOXSWA cwa concentration data and associated statistics

+

read.TOXSWA_cwa

+

Read TOXSWA surface water concentrations

+

plot

+

Plot TOXSWA surface water concentrations

+

Classifications and indicators

+

Evaluating environmental fate properties

+
+

SSLRC_mobility_classification

+

Determine the SSLRC mobility classification for a chemical substance from its Koc

+

GUS print

+

Groundwater ubiquity score based on Gustafson (1989)

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