From df2e56c3ec7b166a2d329cf41ef58ec268910f44 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 10 Sep 2026 12:42:19 +0200 Subject: Update online docs --- docs/reference/one_box.html | 39 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) (limited to 'docs/reference/one_box.html') diff --git a/docs/reference/one_box.html b/docs/reference/one_box.html index 4987f15..3410ac4 100644 --- a/docs/reference/one_box.html +++ b/docs/reference/one_box.html @@ -53,6 +53,17 @@ # S3 method for class 'character' one_box(x, ini = 1, parms, ..., t_end = 100, res = 0.01) +# S3 method for class 'mkinmod' +one_box( + x, + ini = c(1, rep(0, length(x$diffs) - 1)), + odeparms, + solution_type = "deSolve", + ..., + t_end = 100, + res = 0.01 +) + # S3 method for class 'mkinfit' one_box(x, ini = "model", ..., t_end = 100, res = 0.01) @@ -92,6 +103,14 @@ all observed variables.

parms

A named numeric vector containing the model parameters

+ +
odeparms
+

Will be passed to mkinpredict

+ + +
solution_type
+

Will be passed to mkinpredict

+

Value

@@ -120,6 +139,26 @@ all observed variables.

pred_2 <- one_box(fit_2, ini = "model") plot(pred_2) +library(mkin) +SFO_SFO <- mkinmod( + parent = mkinsub("SFO", to = "m1"), + m1 = mkinsub("SFO")) +#> Temporary DLL for differentials generated and loaded +c_0 = c(parent = 100, m1 = 0) +deg_parms = c(k_parent = 0.15, f_parent_to_m1 = 0.5, k_m1 = 0.01) +sfo_sfo_box <- one_box(SFO_SFO, odeparms = deg_parms, ini = c_0) +head(sfo_sfo_box) +#> Time Series: +#> Start = c(0, 1) +#> End = c(0, 6) +#> Frequency = 100 +#> parent m1 +#> 0.00 100.00000 0.00000000 +#> 0.01 99.85011 0.07494003 +#> 0.02 99.70045 0.14976024 +#> 0.03 99.55101 0.22446081 +#> 0.04 99.40180 0.29904192 +#> 0.05 99.25281 0.37350376