From 37a1513d73201dbacc71af3c33a2a2a4e798583c Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 12 Jun 2019 18:15:46 +0200 Subject: Update of static docs --- docs/reference/FOCUS_GW_scenarios_2012.html | 2 +- docs/reference/FOCUS_Step_12_scenarios.html | 2 +- docs/reference/FOMC_actual_twa.html | 2 +- docs/reference/GUS.html | 2 +- docs/reference/PEC_FOMC_accu_rel.html | 2 +- docs/reference/PEC_soil.html | 2 +- docs/reference/PEC_soil_mets.html | 2 +- docs/reference/PEC_sw_drainage_UK.html | 2 +- docs/reference/PEC_sw_drift.html | 2 +- docs/reference/PEC_sw_exposit_drainage.html | 2 +- docs/reference/PEC_sw_exposit_runoff.html | 2 +- docs/reference/PEC_sw_focus.html | 2 +- docs/reference/PEC_sw_sed.html | 2 +- docs/reference/SFO_actual_twa.html | 2 +- docs/reference/SSLRC_mobility_classification.html | 2 +- docs/reference/TOXSWA_cwa.html | 2 +- docs/reference/chent_focus_sw.html | 2 +- docs/reference/drift_data_JKI.html | 2 +- docs/reference/endpoint.html | 2 +- docs/reference/geomean.html | 2 +- docs/reference/get_vertex.html | 2 +- docs/reference/index.html | 2 +- docs/reference/max_twa.html | 2 +- docs/reference/one_box-1.png | Bin 15900 -> 15801 bytes docs/reference/one_box-2.png | Bin 15306 -> 15228 bytes docs/reference/one_box-3.png | Bin 30090 -> 30063 bytes docs/reference/one_box.html | 5 +++-- docs/reference/perc_runoff_exposit.html | 2 +- docs/reference/perc_runoff_reduction_exposit.html | 2 +- docs/reference/pfm_degradation.html | 2 +- docs/reference/plot.TOXSWA_cwa-1.png | Bin 21899 -> 21821 bytes docs/reference/plot.TOXSWA_cwa-2.png | Bin 21097 -> 21005 bytes docs/reference/plot.TOXSWA_cwa-3.png | Bin 22377 -> 22278 bytes docs/reference/plot.TOXSWA_cwa-4.png | Bin 22788 -> 22682 bytes docs/reference/plot.TOXSWA_cwa-5.png | Bin 16346 -> 16209 bytes docs/reference/plot.TOXSWA_cwa.html | 2 +- docs/reference/plot.one_box-1.png | Bin 16217 -> 16135 bytes docs/reference/plot.one_box-2.png | Bin 32580 -> 32593 bytes docs/reference/plot.one_box-3.png | Bin 37322 -> 37285 bytes docs/reference/plot.one_box.html | 5 +++-- docs/reference/read.TOXSWA_cwa.html | 2 +- docs/reference/sawtooth-1.png | Bin 16254 -> 16202 bytes docs/reference/sawtooth-2.png | Bin 37322 -> 37285 bytes docs/reference/sawtooth.html | 15 +++++++-------- docs/reference/soil_scenario_data_EFSA_2015.html | 2 +- docs/reference/soil_scenario_data_EFSA_2017.html | 2 +- docs/reference/twa.html | 2 +- 47 files changed, 44 insertions(+), 43 deletions(-) (limited to 'docs/reference') diff --git a/docs/reference/FOCUS_GW_scenarios_2012.html b/docs/reference/FOCUS_GW_scenarios_2012.html index 4fbb601..a70e56e 100644 --- a/docs/reference/FOCUS_GW_scenarios_2012.html +++ b/docs/reference/FOCUS_GW_scenarios_2012.html @@ -207,7 +207,7 @@ soil definitions are from page 46ff. from FOCUS (2012).

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/FOCUS_Step_12_scenarios.html b/docs/reference/FOCUS_Step_12_scenarios.html index e9bc762..8f58610 100644 --- a/docs/reference/FOCUS_Step_12_scenarios.html +++ b/docs/reference/FOCUS_Step_12_scenarios.html @@ -310,7 +310,7 @@ The text file is not included in the package as its licence is not clear.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/FOMC_actual_twa.html b/docs/reference/FOMC_actual_twa.html index d0e9df8..7dde9fb 100644 --- a/docs/reference/FOMC_actual_twa.html +++ b/docs/reference/FOMC_actual_twa.html @@ -172,7 +172,7 @@
-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/GUS.html b/docs/reference/GUS.html index b2691ec..7f22c59 100644 --- a/docs/reference/GUS.html +++ b/docs/reference/GUS.html @@ -234,7 +234,7 @@ toxicology and chemistry 8(4) 339–57.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/PEC_FOMC_accu_rel.html b/docs/reference/PEC_FOMC_accu_rel.html index cce464c..be189bd 100644 --- a/docs/reference/PEC_FOMC_accu_rel.html +++ b/docs/reference/PEC_FOMC_accu_rel.html @@ -152,7 +152,7 @@
-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/PEC_soil.html b/docs/reference/PEC_soil.html index 13b2209..b1cc84c 100644 --- a/docs/reference/PEC_soil.html +++ b/docs/reference/PEC_soil.html @@ -358,7 +358,7 @@ from 2017 (p. 92).

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/PEC_soil_mets.html b/docs/reference/PEC_soil_mets.html index b83bb31..fe59070 100644 --- a/docs/reference/PEC_soil_mets.html +++ b/docs/reference/PEC_soil_mets.html @@ -156,7 +156,7 @@ maximum occurrence in soil and their soil DT50

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/PEC_sw_drainage_UK.html b/docs/reference/PEC_sw_drainage_UK.html index 813ac59..5e96f42 100644 --- a/docs/reference/PEC_sw_drainage_UK.html +++ b/docs/reference/PEC_sw_drainage_UK.html @@ -179,7 +179,7 @@ published on the CRC website

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/PEC_sw_drift.html b/docs/reference/PEC_sw_drift.html index fd36cac..3ce87e4 100644 --- a/docs/reference/PEC_sw_drift.html +++ b/docs/reference/PEC_sw_drift.html @@ -191,7 +191,7 @@ with input via spray drift.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/PEC_sw_exposit_drainage.html b/docs/reference/PEC_sw_exposit_drainage.html index 7e1ff1b..1187559 100644 --- a/docs/reference/PEC_sw_exposit_drainage.html +++ b/docs/reference/PEC_sw_exposit_drainage.html @@ -227,7 +227,7 @@ autumn/winter/early spring.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/PEC_sw_exposit_runoff.html b/docs/reference/PEC_sw_exposit_runoff.html index 28e2f89..f8b0d8d 100644 --- a/docs/reference/PEC_sw_exposit_runoff.html +++ b/docs/reference/PEC_sw_exposit_runoff.html @@ -245,7 +245,7 @@ and the bound fraction.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/PEC_sw_focus.html b/docs/reference/PEC_sw_focus.html index aba76e5..3e8223b 100644 --- a/docs/reference/PEC_sw_focus.html +++ b/docs/reference/PEC_sw_focus.html @@ -355,7 +355,7 @@ should be written

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/PEC_sw_sed.html b/docs/reference/PEC_sw_sed.html index 5c03e8f..2d09a97 100644 --- a/docs/reference/PEC_sw_sed.html +++ b/docs/reference/PEC_sw_sed.html @@ -184,7 +184,7 @@ g/cm3)

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/SFO_actual_twa.html b/docs/reference/SFO_actual_twa.html index 59e759b..c290ade 100644 --- a/docs/reference/SFO_actual_twa.html +++ b/docs/reference/SFO_actual_twa.html @@ -168,7 +168,7 @@
-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/SSLRC_mobility_classification.html b/docs/reference/SSLRC_mobility_classification.html index a41b289..9cfa9c8 100644 --- a/docs/reference/SSLRC_mobility_classification.html +++ b/docs/reference/SSLRC_mobility_classification.html @@ -158,7 +158,7 @@ checked against the spreadsheet published on the CRC website

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/TOXSWA_cwa.html b/docs/reference/TOXSWA_cwa.html index f430cba..d840e52 100644 --- a/docs/reference/TOXSWA_cwa.html +++ b/docs/reference/TOXSWA_cwa.html @@ -202,7 +202,7 @@ for the requested moving window sizes in days.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/chent_focus_sw.html b/docs/reference/chent_focus_sw.html index 0ba53be..2579c47 100644 --- a/docs/reference/chent_focus_sw.html +++ b/docs/reference/chent_focus_sw.html @@ -184,7 +184,7 @@ systems

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/drift_data_JKI.html b/docs/reference/drift_data_JKI.html index be24f42..9c14f54 100644 --- a/docs/reference/drift_data_JKI.html +++ b/docs/reference/drift_data_JKI.html @@ -411,7 +411,7 @@ included.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/endpoint.html b/docs/reference/endpoint.html index d55daeb..f5520f6 100644 --- a/docs/reference/endpoint.html +++ b/docs/reference/endpoint.html @@ -223,7 +223,7 @@ exponent is often called 1/n.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/geomean.html b/docs/reference/geomean.html index 1e106e0..c52e3e8 100644 --- a/docs/reference/geomean.html +++ b/docs/reference/geomean.html @@ -162,7 +162,7 @@ returns 0 if at least one element of the vector is 0.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/get_vertex.html b/docs/reference/get_vertex.html index 10957ce..73c0b22 100644 --- a/docs/reference/get_vertex.html +++ b/docs/reference/get_vertex.html @@ -144,7 +144,7 @@ https://stackoverflow.com/a/717791

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/index.html b/docs/reference/index.html index 556cb67..c24f7cc 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -372,7 +372,7 @@ water concentrations

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/max_twa.html b/docs/reference/max_twa.html index 07060af..fee0ceb 100644 --- a/docs/reference/max_twa.html +++ b/docs/reference/max_twa.html @@ -193,7 +193,7 @@ SFO, FOMC and DFOP models and to the parent compound

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/one_box-1.png b/docs/reference/one_box-1.png index 5015348..10bc9f7 100644 Binary files a/docs/reference/one_box-1.png and b/docs/reference/one_box-1.png differ diff --git a/docs/reference/one_box-2.png b/docs/reference/one_box-2.png index eb60bd6..9cbb045 100644 Binary files a/docs/reference/one_box-2.png and b/docs/reference/one_box-2.png differ diff --git a/docs/reference/one_box-3.png b/docs/reference/one_box-3.png index fcb308b..ec1cc0c 100644 Binary files a/docs/reference/one_box-3.png and b/docs/reference/one_box-3.png differ diff --git a/docs/reference/one_box.html b/docs/reference/one_box.html index 8fd10ba..e7379e2 100644 --- a/docs/reference/one_box.html +++ b/docs/reference/one_box.html @@ -175,7 +175,8 @@ all observed variables.

pred_1 <- one_box(fit) plot(pred_1)
# Use a model with more than one observed variable -m_2 <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
fit_2 <- mkinfit(m_2, FOCUS_2006_D, quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
pred_2 <- one_box(fit_2, ini = "model") +m_2 <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
fit_2 <- mkinfit(m_2, FOCUS_2006_D, quiet = TRUE) +pred_2 <- one_box(fit_2, ini = "model") plot(pred_2)
-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/perc_runoff_exposit.html b/docs/reference/perc_runoff_exposit.html index 8bb9c42..4473907 100644 --- a/docs/reference/perc_runoff_exposit.html +++ b/docs/reference/perc_runoff_exposit.html @@ -163,7 +163,7 @@
-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/perc_runoff_reduction_exposit.html b/docs/reference/perc_runoff_reduction_exposit.html index a4f7857..ff71d24 100644 --- a/docs/reference/perc_runoff_reduction_exposit.html +++ b/docs/reference/perc_runoff_reduction_exposit.html @@ -178,7 +178,7 @@ from which the values were taken.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/pfm_degradation.html b/docs/reference/pfm_degradation.html index 9d3a2ac..79fbfe1 100644 --- a/docs/reference/pfm_degradation.html +++ b/docs/reference/pfm_degradation.html @@ -174,7 +174,7 @@ is calculated (SFO model).

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/plot.TOXSWA_cwa-1.png b/docs/reference/plot.TOXSWA_cwa-1.png index 79f5bfd..c6a278a 100644 Binary files a/docs/reference/plot.TOXSWA_cwa-1.png and b/docs/reference/plot.TOXSWA_cwa-1.png differ diff --git a/docs/reference/plot.TOXSWA_cwa-2.png b/docs/reference/plot.TOXSWA_cwa-2.png index d306e0f..869c43c 100644 Binary files a/docs/reference/plot.TOXSWA_cwa-2.png and b/docs/reference/plot.TOXSWA_cwa-2.png differ diff --git a/docs/reference/plot.TOXSWA_cwa-3.png b/docs/reference/plot.TOXSWA_cwa-3.png index e347b3f..315c741 100644 Binary files a/docs/reference/plot.TOXSWA_cwa-3.png and b/docs/reference/plot.TOXSWA_cwa-3.png differ diff --git a/docs/reference/plot.TOXSWA_cwa-4.png b/docs/reference/plot.TOXSWA_cwa-4.png index 0cb99f8..a0a88f9 100644 Binary files a/docs/reference/plot.TOXSWA_cwa-4.png and b/docs/reference/plot.TOXSWA_cwa-4.png differ diff --git a/docs/reference/plot.TOXSWA_cwa-5.png b/docs/reference/plot.TOXSWA_cwa-5.png index 44eb28f..3ac506d 100644 Binary files a/docs/reference/plot.TOXSWA_cwa-5.png and b/docs/reference/plot.TOXSWA_cwa-5.png differ diff --git a/docs/reference/plot.TOXSWA_cwa.html b/docs/reference/plot.TOXSWA_cwa.html index 896080e..78a29ae 100644 --- a/docs/reference/plot.TOXSWA_cwa.html +++ b/docs/reference/plot.TOXSWA_cwa.html @@ -194,7 +194,7 @@ to suspended matter?

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/plot.one_box-1.png b/docs/reference/plot.one_box-1.png index 6179195..cf3f132 100644 Binary files a/docs/reference/plot.one_box-1.png and b/docs/reference/plot.one_box-1.png differ diff --git a/docs/reference/plot.one_box-2.png b/docs/reference/plot.one_box-2.png index 56f1454..0e152d6 100644 Binary files a/docs/reference/plot.one_box-2.png and b/docs/reference/plot.one_box-2.png differ diff --git a/docs/reference/plot.one_box-3.png b/docs/reference/plot.one_box-3.png index b2c339b..ad93165 100644 Binary files a/docs/reference/plot.one_box-3.png and b/docs/reference/plot.one_box-3.png differ diff --git a/docs/reference/plot.one_box.html b/docs/reference/plot.one_box.html index 6fcec65..6b8fdbb 100644 --- a/docs/reference/plot.one_box.html +++ b/docs/reference/plot.one_box.html @@ -163,7 +163,8 @@ be shown if max_twa is not NULL.

dfop_pred <- one_box("DFOP", parms = c(k1 = 0.2, k2 = 0.02, g = 0.7))
 plot(dfop_pred)
plot(sawtooth(dfop_pred, 3, 7), max_twa = 21)

 # Use a fitted mkinfit model
-m_2 <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
fit_2 <- mkinfit(m_2, FOCUS_2006_D, quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
pred_2 <- one_box(fit_2, ini = 1)
+m_2 <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
fit_2 <- mkinfit(m_2, FOCUS_2006_D, quiet = TRUE)
+pred_2 <- one_box(fit_2, ini = 1)
 pred_2_saw <- sawtooth(pred_2, 2, 7)
 plot(pred_2_saw, max_twa = 21, max_twa_var = "m1")
@@ -186,7 +187,7 @@ be shown if max_twa is not NULL.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/read.TOXSWA_cwa.html b/docs/reference/read.TOXSWA_cwa.html index d7bb0be..f081162 100644 --- a/docs/reference/read.TOXSWA_cwa.html +++ b/docs/reference/read.TOXSWA_cwa.html @@ -202,7 +202,7 @@ generating event statistics.

-

Site built with pkgdown 1.3.0.9000.

+

Site built with pkgdown 1.3.0.

diff --git a/docs/reference/sawtooth-1.png b/docs/reference/sawtooth-1.png index 02a6b7c..2952433 100644 Binary files a/docs/reference/sawtooth-1.png and b/docs/reference/sawtooth-1.png differ diff --git a/docs/reference/sawtooth-2.png b/docs/reference/sawtooth-2.png index b2c339b..ad93165 100644 Binary files a/docs/reference/sawtooth-2.png and b/docs/reference/sawtooth-2.png differ diff --git a/docs/reference/sawtooth.html b/docs/reference/sawtooth.html index 93085e2..a94833c 100644 --- a/docs/reference/sawtooth.html +++ b/docs/reference/sawtooth.html @@ -32,9 +32,8 @@ - + @@ -108,9 +107,8 @@ times, with an interval i." />
-

If the number of application cycles n is greater than 1, the -application pattern specified in applications is repeated n -times, with an interval i.

+

If the application pattern is specified in applications, +n and i are disregarded.

@@ -145,7 +143,8 @@ the corresponding amounts applied in the second column.

applications = data.frame(time = seq(0, 14, by = 7), amount = c(1, 2, 3))
 pred <- one_box(10)
 plot(sawtooth(pred, applications = applications))

-m_2 <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
fit_2 <- mkinfit(m_2, FOCUS_2006_D, quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
pred_2 <- one_box(fit_2, ini = 1)
+m_2 <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
fit_2 <- mkinfit(m_2, FOCUS_2006_D, quiet = TRUE)
+pred_2 <- one_box(fit_2, ini = 1)
 pred_2_saw <- sawtooth(pred_2, 2, 7)
 plot(pred_2_saw, max_twa = 21, max_twa_var = "m1")

 max_twa(pred_2_saw)
#> $max
@@ -178,7 +177,7 @@ the corresponding amounts applied in the second column.

 

 
 

-  
Site built with pkgdown 1.3.0.9000.

+  
Site built with pkgdown 1.3.0.

 

       
    
diff --git a/docs/reference/soil_scenario_data_EFSA_2015.html b/docs/reference/soil_scenario_data_EFSA_2015.html
index 93d1a42..cb2e1fa 100644
--- a/docs/reference/soil_scenario_data_EFSA_2015.html
+++ b/docs/reference/soil_scenario_data_EFSA_2015.html
@@ -185,7 +185,7 @@ scenario and model adjustment factors from p. 15 and p. 17 are included.

 
 
 

-  
Site built with pkgdown 1.3.0.9000.

+  
Site built with pkgdown 1.3.0.

 

       
    
diff --git a/docs/reference/soil_scenario_data_EFSA_2017.html b/docs/reference/soil_scenario_data_EFSA_2017.html
index e87663b..21f69a2 100644
--- a/docs/reference/soil_scenario_data_EFSA_2017.html
+++ b/docs/reference/soil_scenario_data_EFSA_2017.html
@@ -166,7 +166,7 @@ scenario and model adjustment factors from p. 16 and p. 18 are included.

 
 
 

-  
Site built with pkgdown 1.3.0.9000.

+  
Site built with pkgdown 1.3.0.

 

       
    
diff --git a/docs/reference/twa.html b/docs/reference/twa.html
index 1ca31c1..86c0f9b 100644
--- a/docs/reference/twa.html
+++ b/docs/reference/twa.html
@@ -172,7 +172,7 @@ is after one window has passed.

 
 
 

-  
Site built with pkgdown 1.3.0.9000.

+  
Site built with pkgdown 1.3.0.

 

       
    
-- 
cgit v1.2.1