From 3bb842b93107dd6207610de1fe5b44be66779e4d Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 25 Apr 2019 10:25:56 +0200 Subject: Remove leftover docs from earlier version Docs now live in docs/ --- inst/web/PEC_soil.html | 228 ------------------------------------------------- 1 file changed, 228 deletions(-) delete mode 100644 inst/web/PEC_soil.html (limited to 'inst/web/PEC_soil.html') diff --git a/inst/web/PEC_soil.html b/inst/web/PEC_soil.html deleted file mode 100644 index 1304d19..0000000 --- a/inst/web/PEC_soil.html +++ /dev/null @@ -1,228 +0,0 @@ - - - - -PEC_soil. pfm 0.3-7 - - - - - - - - - - - - - - - - - -
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Calculate predicted environmental concentrations in soil

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Usage

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PEC_soil(rate, rate_units = "g/ha", interception = 0, mixing_depth = 5, PEC_units = "mg/kg", PEC_pw_units = "mg/L", interval = NA, n_periods = Inf, tillage_depth = 20, chent = NA, DT50 = NA, Koc = NA, Kom = Koc/1.724, t_avg = 0, scenarios = c("default", "EFSA_2015"), porewater = FALSE)
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Arguments

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rate
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Application rate in units specified below
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rate_units
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Defaults to g/ha
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interception
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The fraction of the application rate that does not reach the soil
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mixing_depth
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Mixing depth in cm
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PEC_units
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Requested units for the calculated PEC. Only mg/kg currently supported
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PEC_pw_units
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Only mg/L currently supported
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interval
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Period of the deeper mixing, defaults to 365, which is a year if -rate units are in days
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n_periods
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Number of periods to be considered for long term PEC calculations
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tillage_depth
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Periodic (see interval) deeper mixing in cm
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chent
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An optional chent object holding substance specific information. Can -also be a name for the substance as a character string
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DT50
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If specified, overrides soil DT50 endpoints from a chent object -If DT50 is not specified here and not available from the chent object, zero -degradation is assumed
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Koc
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If specified, overrides Koc endpoints from a chent object
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Kom
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Calculated from Koc by default, but can explicitly be specified -as Kom here
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t_avg
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Averaging times for time weighted average concentrations
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scenarios
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If this is 'default', the DT50 will be used without correction -and soil properties as specified in the REACH guidance (R.16, Table -R.16-9) are used for porewater PEC calculations. If this is "EFSA_2015", -the DT50 is taken to be a modelling half-life at 20°C and pF2 (for when -'chents' is specified, the DegT50 with destination 'PECgw' will be used), -and corrected using an Arrhenius activation energy of 65.4 kJ/mol. Also -model and scenario adjustment factors from the EFSA guidance are used.
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porewater
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Should equilibrium porewater concentrations be estimated -based on Kom and the organic carbon fraction of the soil instead of total -soil concentrations? Based on equation (7) given in the PPR panel opinion -(EFSA 2012, p. 24) and the scenarios specified in the EFSA guidance (2015, -p. 13).
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Value

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-The predicted concentration in soil -

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Description

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This is a basic calculation of a contaminant concentration in bulk soil -based on complete, instantaneous mixing. If an interval is given, an -attempt is made at calculating a long term maximum concentration using -the concepts layed out for example in the PPR panel opinion (EFSA 2012).

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Details

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This assumes that the complete load to soil during the time specified by -'interval' (typically 365 days) is dosed at once. As in the PPR panel -opinion cited below (PPR panel 2012), only temperature correction using the -Arrhenius equation is performed.

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Total soil and porewater PEC values for the scenarios as defined in the EFSA -guidance (2015, p. 13) can easily be calculated.

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Note

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If temperature information is available in the selected scenarios, as - e.g. in the EFSA scenarios, the DT50 for groundwater modelling - (destination 'PECgw') is taken from the chent object, otherwise the DT50 - with destination 'PECsoil'.

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References

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EFSA Panel on Plant Protection Products and their Residues (2012) - Scientific Opinion on the science behind the guidance for scenario - selection and scenario parameterisation for predicting environmental - concentrations of plant protection products in soil. EFSA Journal - 10(2) 2562, doi:10.2903/j.efsa.2012.2562

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EFSA (European Food Safety Authority) (2015) EFSA guidance document for - predicting environmental concentrations of active substances of plant - protection products and transformation products of these active substances - in soil. EFSA Journal 13(4) 4093 - doi:10.2903/j.efsa.2015.4093

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Examples

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PEC_soil(100, interception = 0.25) -
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scenario -t_avg default - 0 0.1 -
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-# This is example 1 starting at p. 79 of the EFSA guidance (2015) -PEC_soil(1000, interval = 365, DT50 = 250, t_avg = c(0, 21), - scenarios = "EFSA_2015") -
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scenario -t_avg CTN CTC CTS - 0 21.96827 11.53750 9.145259 - 21 21.78517 11.40701 9.017370 -
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PEC_soil(1000, interval = 365, DT50 = 250, t_av = c(0, 21), - Kom = 1000, scenarios = "EFSA_2015", porewater = TRUE) -
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scenario -t_avg CLN CLC CLS - 0 0.7589401 0.6674322 0.9147861 - 21 0.7506036 0.6590345 0.8987279 -
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-# The following is from example 4 starting at p. 85 of the EFSA guidance (2015) -# Metabolite M2 -# Calculate total and porewater soil concentrations for tier 1 scenarios -# Relative molar mass is 100/300, formation fraction is 0.7 * 1 -results_pfm <- PEC_soil(100/300 * 0.7 * 1 * 1000, interval = 365, DT50 = 250, t_avg = c(0, 21), - scenarios = "EFSA_2015") -results_pfm_pw <- PEC_soil(100/300 * 0.7 * 1000, interval = 365, DT50 = 250, t_av = c(0, 21), - Kom = 100, scenarios = "EFSA_2015", porewater = TRUE) -
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Author

- -Johannes Ranke - - -
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