From 3bb842b93107dd6207610de1fe5b44be66779e4d Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 25 Apr 2019 10:25:56 +0200 Subject: Remove leftover docs from earlier version Docs now live in docs/ --- inst/web/endpoint.html | 142 ------------------------------------------------- 1 file changed, 142 deletions(-) delete mode 100644 inst/web/endpoint.html (limited to 'inst/web/endpoint.html') diff --git a/inst/web/endpoint.html b/inst/web/endpoint.html deleted file mode 100644 index 521f7f4..0000000 --- a/inst/web/endpoint.html +++ /dev/null @@ -1,142 +0,0 @@ - - - - -endpoint. pfm 0.3-7 - - - - - - - - - - - - - - - -
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Retrieve endpoint information from the chyaml field of a chent object

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Usage

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endpoint(chent, medium = "soil", type = c("degradation", "sorption"), lab_field = c(NA, "laboratory", "field"), redox = c(NA, "aerobic", "anaerobic"), value = c("DT50ref", "Kfoc", "N"), aggregator = geomean, raw = FALSE, signif = 3)

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soil_DT50(chent, aggregator = geomean, signif = 3, lab_field = "laboratory", value = "DT50ref", redox = "aerobic", raw = FALSE)

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soil_Kfoc(chent, aggregator = geomean, signif = 3, value = "Kfoc", raw = FALSE)

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soil_N(chent, aggregator = mean, signif = 3, raw = FALSE)

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soil_sorption(chent, values = c("Kfoc", "N"), aggregators = c(Kfoc = geomean, Koc = geomean, N = mean), signif = c(Kfoc = 3, N = 3), raw = FALSE)
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Arguments

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chent
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The chent object to get the information from
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medium
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The medium for which information is sought
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type
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The information type
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lab_field
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If not NA, do we want laboratory or field endpoints
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redox
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If not NA, are we looking for aerobic or anaerobic data
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value
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The name of the value we want. The list given in the -usage section is not exclusive
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aggregator
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The aggregator function. Can be mean, -geomean, or identity, for example.
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raw
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Should the number(s) be returned as stored in the chent -object (could be a character value) to retain original information -about precision?
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signif
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How many significant digits do we want
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values
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The values to be returned
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aggregators
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A named vector of aggregator functions to be used
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Value

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-The result from applying the aggregator function to - the values converted to a numeric vector, rounded to the - given number of significant digits, or, if raw = TRUE, - the values as a character value, retaining any implicit - information on precision that may be present. -

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Description

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R6 class objects of class chent represent chemical entities -and can hold a list of information loaded from a chemical yaml file in their -chyaml field. Such information is extracted and optionally aggregated by -this function.

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Details

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The functions soil_* are functions to extract soil specific endpoints. -For the Freundlich exponent, the capital letter N is used in order to -facilitate dealing with such data in R. In pesticide fate modelling, this -exponent is often called 1/n.

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