From 12a31f4c130c551f82232d9ef7dfb608bd52c53f Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 27 Sep 2016 23:00:48 +0200 Subject: Reorganise repository using standard package layout --- inst/web/read.TOXSWA_cwa.html | 138 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 138 insertions(+) create mode 100644 inst/web/read.TOXSWA_cwa.html (limited to 'inst/web/read.TOXSWA_cwa.html') diff --git a/inst/web/read.TOXSWA_cwa.html b/inst/web/read.TOXSWA_cwa.html new file mode 100644 index 0000000..3f2d997 --- /dev/null +++ b/inst/web/read.TOXSWA_cwa.html @@ -0,0 +1,138 @@ + + + + +read.TOXSWA_cwa. pfm 0.3-7 + + + + + + + + + + + + + + + +
+
+
+ pfm 0.3-7 +
+ +
+
+
+
+ +
+
+ +
+ +

Read TOXSWA surface water concentrations

+ +
+
+

Usage

+ 
read.TOXSWA_cwa(filename, basedir = ".", zipfile = NULL, segment = "last", substance = "parent", total = FALSE, windows = NULL, thresholds = NULL)
+ +

Arguments

+
+
filename
+
The filename of the cwa file (TOXSWA 2.x.y or similar) or the +out file (FOCUS TOXSWA 4, i.e. TOXSWA 4.4.2 or similar).
+
basedir
+
The path to the directory where the cwa file resides.
+
zipfile
+
Optional path to a zip file containing the cwa file.
+
segment
+
The segment for which the data should be read. Either "last", or +the segment number.
+
substance
+
For TOXSWA 4 .out files, the default value "parent" leads +to reading concentrations of the parent compound. Alternatively, the substance +of interested can be selected by its code name.
+
total
+
Set this to TRUE in order to read total concentrations as well. This is +only necessary for .out files as generated by TOXSWA 4.4.2 or similar, not for .cwa +files. For .cwa files, the total concentration is always read as well.
+
windows
+
Numeric vector of width of moving windows in days, for calculating +maximum time weighted average concentrations and areas under the curve.
+
thresholds
+
Numeric vector of threshold concentrations in µg/L for +generating event statistics.
+
+ +
+

Value

+ +

+An instance of an R6 object of class +TOXSWA_cwa. +

+ +
+ +
+

Description

+ +

Read TOXSWA hourly concentrations of a chemical substance in a specific +segment of a TOXSWA surface water body. Per default, the data for the last +segment are imported. As TOXSWA 4 reports the values at the end of the hour +(ConLiqWatLayCur) in its summary file, we use this value as well instead +of the hourly averages (ConLiqWatLay).

+ +
+ +

Examples

+ 
H_sw_D4_pond  <- read.TOXSWA_cwa("00001p_pa.cwa",
+                                 basedir = "SwashProjects/project_H_sw/TOXSWA",
+                                 zipfile = system.file("testdata/SwashProjects.zip",
+                                                       package = "pfm"))
+
+
+
+ + + +

Author

+ +Johannes Ranke + + +
+
+ + +
+ + \ No newline at end of file -- cgit v1.2.1