From 12a31f4c130c551f82232d9ef7dfb608bd52c53f Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 27 Sep 2016 23:00:48 +0200
Subject: Reorganise repository using standard package layout

---
 man/read.TOXSWA_cwa.Rd | 56 ++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 56 insertions(+)
 create mode 100644 man/read.TOXSWA_cwa.Rd

(limited to 'man/read.TOXSWA_cwa.Rd')

diff --git a/man/read.TOXSWA_cwa.Rd b/man/read.TOXSWA_cwa.Rd
new file mode 100644
index 0000000..84ef3da
--- /dev/null
+++ b/man/read.TOXSWA_cwa.Rd
@@ -0,0 +1,56 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/TOXSWA_cwa.R
+\name{read.TOXSWA_cwa}
+\alias{read.TOXSWA_cwa}
+\title{Read TOXSWA surface water concentrations}
+\usage{
+read.TOXSWA_cwa(filename, basedir = ".", zipfile = NULL, segment = "last",
+  substance = "parent", total = FALSE, windows = NULL,
+  thresholds = NULL)
+}
+\arguments{
+\item{filename}{The filename of the cwa file (TOXSWA 2.x.y  or similar) or the
+out file (FOCUS TOXSWA 4, i.e. TOXSWA 4.4.2 or similar).}
+
+\item{basedir}{The path to the directory where the cwa file resides.}
+
+\item{zipfile}{Optional path to a zip file containing the cwa file.}
+
+\item{segment}{The segment for which the data should be read. Either "last", or 
+the segment number.}
+
+\item{substance}{For TOXSWA 4 .out files, the default value "parent" leads
+to reading concentrations of the parent compound. Alternatively, the substance
+of interested can be selected by its code name.}
+
+\item{total}{Set this to TRUE in order to read total concentrations as well. This is 
+only necessary for .out files as generated by TOXSWA 4.4.2 or similar, not for .cwa
+files. For .cwa files, the total concentration is always read as well.}
+
+\item{windows}{Numeric vector of width of moving windows in days, for calculating
+maximum time weighted average concentrations and areas under the curve.}
+
+\item{thresholds}{Numeric vector of threshold concentrations in µg/L for
+generating event statistics.}
+}
+\value{
+An instance of an R6 object of class
+\code{\link{TOXSWA_cwa}}.
+}
+\description{
+Read TOXSWA hourly concentrations of a chemical substance in a specific
+segment of a TOXSWA surface water body. Per default, the data for the last
+segment are imported. As TOXSWA 4 reports the values at the end of the hour
+(ConLiqWatLayCur) in its summary file, we use this value as well instead
+of the hourly averages (ConLiqWatLay).
+}
+\examples{
+H_sw_D4_pond  <- read.TOXSWA_cwa("00001p_pa.cwa",
+                                 basedir = "SwashProjects/project_H_sw/TOXSWA",
+                                 zipfile = system.file("testdata/SwashProjects.zip",
+                                                       package = "pfm"))
+}
+\author{
+Johannes Ranke
+}
+
-- 
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