commit bba2cf3a70849ba86f37520d3e909cf1c706f416 Author: Johannes Ranke Date: 2016-12-22 11:06:57 +0100 Fix reading in times from .out files The code from the previous commit was broken. Also, the time zone for the times that are read is now wet to 'UTC', in order to avoid setting different time zones due to daylight savings, which introduces artificial one-hour offsets on changeover days. commit 0af7c7b8c34067fc4756929925239c329b28ed32 Author: Johannes Ranke Date: 2016-12-14 18:26:14 +0100 Changelog update and roxygen run commit 5a04ad3061c1484b45703e44149f49ec97cfbf15 Author: Johannes Ranke Date: 2016-12-14 16:52:14 +0100 Set time correctly for 00:00 hours in .out file For ConLiqWatLayCur_xxxxx entries which are output at 00:00 (midnight), no time is listed in the .out file for this time. This commit introduces a workaround, setting the time to 00:00 when there is no time information. commit e51e063564bffcb75dbb6ab7a364704c8d8e992e Author: Johannes Ranke Date: 2016-12-12 21:24:24 +0100 Fix reading .out for acronyms containing numbers commit 9124e0f7d673c65584c1b2f838a3b944ea89c31d Author: Johannes Ranke Date: 2016-10-13 17:49:18 +0200 Add drat target, remove unmaintained usage hints commit 12a31f4c130c551f82232d9ef7dfb608bd52c53f Author: Johannes Ranke Date: 2016-09-27 23:00:48 +0200 Reorganise repository using standard package layout commit 0d958ab6f84b569b5437f231c56004890c4ae23b Author: Johannes Ranke Date: 2016-09-27 17:50:34 +0200 Make the chents package optional commit 399383adcdb37c4a3e32f1a2133a2fa3663618d0 Author: Johannes Ranke Date: 2016-09-23 18:23:00 +0200 Keep the graph for the markdown file The markdown file is not self-contained as the html file... commit 9fb69b042924045df90119e47ad4dc666dbc8b4d Author: Johannes Ranke Date: 2016-09-23 18:16:51 +0200 Slightly update the README commit 2f618da8cfbeb0379f4d38af6f608a69c6d54bd5 Author: Johannes Ranke Date: 2016-07-30 11:29:09 +0200 Update static documentation commit 3b8730a58f7846b5261922ec90e582e0158a54c7 Author: Johannes Ranke Date: 2016-07-30 11:09:47 +0200 Add 'methods' to dependecies commit 3260b0e875b7af24f2aef7bc2464418525a192df Author: Johannes Ranke Date: 2016-07-30 11:08:05 +0200 Fix the TOXSWA reading test Since a recent commit we are reading the concentrations at the end of each hour, so the test needed to be updated accordingly commit b8f953d04e4094c79b4f860d99f3c1466ed3ad6a Author: Johannes Ranke Date: 2016-07-30 11:06:53 +0200 Import 'is' from methods commit 1ceb226d999d56276c9e361f359368287a0749c4 Author: Johannes Ranke Date: 2016-07-30 10:42:48 +0200 Read cwas from .out files with metabolites TOXSWA 4 stores the detailed output for SWASH runs with metabolites in its .out files. With this commit it is possible to read in .out files from such runs with metabolites. Default is to read in the concentrations for the parent, a newly gained "substance" argument makes it possible to specify the metabolite for which the data should be read. commit d6b230cd1b415a112009227bc9e0ff50316c42f7 Author: Johannes Ranke Date: 2016-07-15 15:05:22 +0200 Fix calculation of t_firstjan There is an inconsistency in (some?) output files, so the first datetime needs to be fixed before reading it into a data frame commit b45c9bfae9e5578dd455ed417363b4996cffd46a Author: Johannes Ranke Date: 2016-06-08 08:36:48 +0200 Clean up remainders of NL drift calculation function commit 234a20018fe9fe9824bcfaae2c391e59d09f9871 Author: Johannes Ranke Date: 2016-06-08 08:29:39 +0200 Use the concentration at the end of the hour This is also what TOXSWA presents in the summary files commit 4284c57c7d53a9aef0c917a050ccf2ab779cfce3 Author: Johannes Ranke Date: 2016-06-08 08:29:39 +0200 Use the concentration at the end of the hour This is also what TOXSWA presents in the summary files commit 057d53d0faed7b297bbb99de8cd4bf3e3e448538 Author: Johannes Ranke Date: 2016-03-10 05:28:03 +0100 Merge the NL drift calculations based on percentages into PEC_sw_drift commit 527d927371083e784ad583a6b3c7465c49a53cdc Author: Johannes Ranke Date: 2016-03-10 05:17:45 +0100 Add NL specific drift calculations commit 1ab6d4c9f186fb7ea9bb8b968e47a9f1eab64583 Author: Johannes Ranke Date: 2016-03-02 17:51:21 +0100 Fix the name of the Chateadun scenario commit d14923ae1ac023c8f8f5ae8b5c0884f4247f764b Author: Johannes Ranke Date: 2016-02-04 18:06:15 +0100 Test reading .out files and close connections commit 98a706373107188496a1df295697e739e51d6b06 Author: Johannes Ranke Date: 2016-02-04 17:45:02 +0100 Improve reading spead for new TOXSWA format commit 057ba40426d49e09c06db26fb7d4072741b4cb8d Author: Johannes Ranke Date: 2016-02-04 12:21:02 +0100 Read cwa data from TOXSWA 4.4.2 .out files commit e7f8a0e82b24d28b74681dafc97f1cf8a4662b51 Author: Johannes Ranke Date: 2015-12-27 12:30:20 +0100 Fix rounding of endpoint retrieval functions commit f9373e361dde232b08fe7431e85bf367a1cfc269 Author: Johannes Ranke Date: 2015-12-27 12:29:37 +0100 Another useless variant to avoid warnings in staticdoc plots commit 3a579d87820ccbec514f1be5eb090e874fd87eec Author: Johannes Ranke Date: 2015-12-22 19:32:54 +0100 EFSA 2015 tier 1 PEC soil, clean up, add static docs commit 9851a97ec915ddbfc8357f1a7e2cabae56c89f7d Author: Johannes Ranke Date: 2015-12-18 14:45:24 +0100 Documentation fixes, chents is currently a hard dependency commit 6b4e342b240baaf18150360986d15895fc80a937 Author: Johannes Ranke Date: 2015-10-15 14:41:26 +0200 Add endpoint and GUS functions, roxygenize commit c43b4947007b3c26bc56260499af51c41b8cd702 Author: Johannes Ranke Date: 2015-10-01 14:42:14 +0200 Add some soil data for FOCUS groundwater scenarios commit 697e0554bf89a63f23b9ab5548e31f218bc483e9 Author: Johannes Ranke Date: 2015-09-11 10:07:53 +0200 Added PEC soil for products as defined in chents v0.1-2 commit 634d4a0a93882a3b2d3961abbdd33694fd93dcc6 Author: Johannes Ranke Date: 2015-09-10 16:18:17 +0200 Add PEC soil for product with serveral ais commit 1ec3ee4a03d4e47fdd3be1bcbe754e478353410b Author: Johannes Ranke Date: 2015-08-22 12:10:06 +0200 Updates of DESCRIPTION and NAMESPACE commit 51aa1a77c9b9b9a6becdb2a5a85213946719b051 Author: Johannes Ranke Date: 2015-08-22 12:06:37 +0200 Add README.html for cgit on jrwb.de commit 83c8575e2abde12208584b9c80935d4a873689fd Author: Johannes Ranke Date: 2015-08-22 12:01:57 +0200 Small documentation updates commit 5038ba57fef6cc386566ec30f3d5dd67e62decff Author: Johannes Ranke Date: 2015-08-21 15:10:42 +0200 Adapt the description to R CMD check requirements commit 4477e69b46e88c196f354463190753650157ea0d Author: Johannes Ranke Date: 2015-08-21 15:01:10 +0200 Updates to pass checks and tests commit ad4cd5d9a1f8c3976d08048a441129b1fb49a62b Author: Johannes Ranke Date: 2015-07-02 16:05:59 +0200 Changes to pass R CMD check --as-cran, roxygen run commit fef0bb7fe916f91dcff089c17aa3290c0ea1ab1f Author: Johannes Ranke Date: 2015-06-12 02:19:38 +0200 Add sediment PEC calculations using the percentage method commit 5b32c30549bfa3cb42ffde7e13f75608b98c79c2 Author: Johannes Ranke Date: 2015-06-12 02:19:01 +0200 Make UK drainage with non-SFO soil degradation work commit 9b8e5cb80ba4a89578d979bee134f8342ca0a527 Author: Johannes Ranke Date: 2015-06-11 17:38:01 +0200 Now we pass R CMD check commit dd803b191062925eda830543236836e7822fd884 Author: Johannes Ranke Date: 2015-06-11 16:57:43 +0200 Add UK tier 1 drainage PEC calculations commit 09cf970942706cfab43753d298b42e8d85216d80 Author: Johannes Ranke Date: 2015-06-11 15:25:22 +0200 Now there is enough content to warrant 0.2-x commit 3aa5fb86772c28402047c7ebd07841061dbcdbba Author: Johannes Ranke Date: 2015-06-11 15:23:22 +0200 Add facilities to calculate decline curves commit d3daa7b73fa5d0508ff51a843247d126c2a11691 Author: Johannes Ranke Date: 2015-06-11 13:17:13 +0200 Generate README.md with current pfm version commit cb0d72e2c2d431bd32ffb129b62ea1a522cbdfeb Author: Johannes Ranke Date: 2015-06-11 13:09:10 +0200 Rename PEC_sw_drift() to PEC_sw_drift_ini() commit ea9b75183bcf41fcdd6f61ec6060e94c4bc321a2 Author: Johannes Ranke Date: 2015-06-11 12:13:47 +0200 Add simple drift PEC ini calculations These are tested for field crops with the CRD spreadsheet commit cbba81d73faa83c63a33afc61be5efc1964925bb Author: Johannes Ranke Date: 2015-06-11 12:12:40 +0200 Use devtools for roxygenizing, improve logging commit 6e4a152925011528c21937f12bc53042a53f72de Author: Johannes Ranke Date: 2015-06-11 10:13:18 +0200 JKI drift percentage data for field crops and pome/stone fruit commit 53099978c971ee8e5c94e67bf972f51629d67fd3 Author: Johannes Ranke Date: 2015-06-11 10:04:22 +0200 and the incomplete documentation commit 372ab2f2f59f0baaee759ce966a705f9f754cf6d Author: Johannes Ranke Date: 2015-06-11 10:03:32 +0200 Intermediate stage for pfm_chent commit 586b248f5d249f4ebaad2175c9f78fcae8646636 Author: Johannes Ranke Date: 2015-06-11 09:54:57 +0200 Formatting commit fd1609aafd2f40266c1e29d8dfdf5e08e8838d35 Author: Johannes Ranke Date: 2015-05-24 03:52:28 +0200 Start of a pfm_chent data object commit e2b1d510e921f7721647b0df6602c2618937c1da Author: Johannes Ranke Date: 2015-05-08 08:47:11 +0200 Update the Figure in the README commit 8021c7cb9aac06e961227a3c0e0b013ec2d2d501 Author: Johannes Ranke Date: 2015-05-07 16:15:23 +0200 Bugfix: Reset maximum event concentration for each event commit 508d883f7689d617d15915dbd26a27f1613bb857 Author: Johannes Ranke Date: 2015-05-07 12:04:28 +0200 Make quarterly labels for plot.TOXSWA_cwa commit c6e57ab29170266b3038b01c54bf161ab361d440 Author: Johannes Ranke Date: 2015-04-24 02:22:21 +0200 Do not test the path to the zip file commit 7d2096855edcc196629c1c7a9983a56ec6addd1e Author: Johannes Ranke Date: 2015-04-24 02:21:04 +0200 Add a geometric mean function commit bcfe0af7970efe36c3aa661e89953fbe3689c310 Author: Johannes Ranke Date: 2015-04-24 02:20:21 +0200 Clean the Makefile a bit commit 768a043848dd84b9e699916657d0a23b2f3b9e83 Author: Johannes Ranke Date: 2015-04-22 13:48:42 +0200 Fix header formatting commit 04502ca0c658a6c929debd61aee87be8c7eceb04 Author: Johannes Ranke Date: 2015-04-22 13:46:32 +0200 Update markdown version of README commit ec79637749d300ab4ca170805c673905e52d67dd Author: Johannes Ranke Date: 2015-04-22 13:42:10 +0200 Add simplest PEC soil calcs, use testthat commit 8ffbc49b3f01deac6f9e83aaa6d318d4e2f8552b Author: Johannes Ranke Date: 2015-01-23 16:44:04 +0100 Add option to plot relative to maximum commit 8975dc148d0a6f222174980eb60314054be9b6cf Author: Johannes Ranke Date: 2015-01-13 14:54:58 +0100 Fix warning in README commit 891af5d0f1ee8d45cd4403af43293463d23ba96b Author: Johannes Ranke Date: 2015-01-13 14:05:31 +0100 README.rmd with example, fix reading unzipped files commit 4d74570f1ca4a94d894c6c5169684a8246d0a51c Author: Johannes Ranke Date: 2015-01-13 12:58:26 +0100 Correctly initialize R6 fields, read from zip files commit ee070c11f7c7faff2f573d27cf32aafab78971a8 Author: Johannes Ranke Date: 2015-01-07 23:56:54 +0100 Pass ... parameters to added cwa lines commit 92d97ba99d7b90d95a67796cb5e68f28f752b70b Author: Johannes Ranke Date: 2014-12-17 21:39:42 +0100 Initial commit: R6 class for TOXSWA cwa files