This is a reimplementation of the FOCUS Step 1 and 2 calculator version 3.2, authored by Michael Klein, in R. Note that results for multiple applications should be compared to the corresponding results for a single application. At current, this is not done automatically in this implementation. Only Step 1 PECs are calculated. However, input files can be generated that are suitable as input for the FOCUS calculator.
Usage
>>>>>>> refs/remotes/origin/mainPEC_sw_focus(
parent,
rate,
n = 1,
i = NA,
comment = "",
met = NULL,
f_drift = NA,
f_rd = 0.1,
scenario = FOCUS_Step_12_scenarios$names,
region = c("n", "s"),
season = c(NA, "of", "mm", "js"),
interception = c("no interception", "minimal crop cover", "average crop cover",
"full canopy"),
met_form_water = TRUE,
txt_file = "pesticide.txt",
overwrite = FALSE,
<<<<<<< HEAD
append = FALSE
)Arguments
- parent
A list containing substance specific parameters, e.g. conveniently generated by [chent_focus_sw].
=======
append = TRUE
)
Arguments
- parent
A list containing substance specific parameters, e.g. conveniently generated by chent_focus_sw.
>>>>>>> refs/remotes/origin/main
- rate
The application rate in g/ha. Overriden when applications are given explicitly
- n
The number of applications
- i
The application interval
- comment
A comment for the input file
- met
A list containing metabolite specific parameters. e.g. <<<<<<< HEAD conveniently generated by [chent_focus_sw]. If not NULL, ======= conveniently generated by chent_focus_sw. If not NULL, >>>>>>> refs/remotes/origin/main the PEC is calculated for this compound, not the parent.
- f_drift
The fraction of the application rate reaching the waterbody via drift. If NA, this is derived from the scenario name and the number of applications via the drift data defined by the <<<<<<< HEAD [FOCUS_Step_12_scenarios]
=======
FOCUS_Step_12_scenarios
>>>>>>> refs/remotes/origin/main
- f_rd
The fraction of the amount applied reaching the waterbody via <<<<<<< HEAD runoff/drainage. At Step 1, it is assumed to be 10 ======= runoff/drainage. At Step 1, it is assumed to be 10%, be it the >>>>>>> refs/remotes/origin/main parent or a metabolite
- scenario
The name of the scenario. Must be one of the scenario <<<<<<< HEAD names given in [FOCUS_Step_12_scenarios]
=======
names given in FOCUS_Step_12_scenarios
>>>>>>> refs/remotes/origin/main
- region
'n' for Northern Europe or 's' for Southern Europe. If NA, only Step 1 PECsw are calculated
- season
'of' for October to February, 'mm' for March to May, and 'js' for June to September. If NA, only step 1 PECsw are calculated
- interception
One of 'no interception' (default), 'minimal crop cover', 'average crop cover' or 'full canopy'
- met_form_water
Should the metabolite formation in water be taken into account? This can be switched off to check the influence and to compare with previous versions of the Steps 12 calculator
- txt_file
the name, and potentially the full path to the Steps.12 input text file to which the specification of the run(s) should be written
- overwrite
Should an existing file a the location specified in
txt_filebe overwritten? Only takes effect if append is FALSE.- append <<<<<<< HEAD
Should the input text file be appended, if it exists?
Note
=======Should the input text file be appended?
Note
>>>>>>> refs/remotes/origin/mainThe formulas for input to the waterbody via runoff/drainage of the parent and subsequent formation of the metabolite in water is not documented in the model description coming with the calculator. As one would expect, this appears to be (as we get the same results) calculated by multiplying the application rate with the molar weight correction and the formation fraction in water/sediment systems.
Step 2 is not implemented.
References
=======References
>>>>>>> refs/remotes/origin/mainFOCUS (2014) Generic guidance for Surface Water Scenarios (version 1.4). FOrum for the Co-ordination of pesticde fate models and their USe. http://esdac.jrc.ec.europa.eu/public_path/projects_data/focus/sw/docs/Generic%20FOCUS_SWS_vc1.4.pdf
Website of the Steps 1 and 2 calculator at the Joint Research <<<<<<< HEAD Center of the European Union: http://esdac.jrc.ec.europa.eu/projects/stepsonetwo
Examples
# Parent only
dummy_1 <- chent_focus_sw("Dummy 1", cwsat = 6000, DT50_ws = 6, Koc = 344.8)
PEC_sw_focus(dummy_1, 3000, f_drift = 0)
=======
Center of the European Union:
http://esdac.jrc.ec.europa.eu/projects/stepsonetwo
Examples
# Parent only
dummy_1 <- chent_focus_sw("Dummy 1", cwsat = 6000, DT50_ws = 6, Koc = 344.8)
PEC_sw_focus(dummy_1, 3000, f_drift = 0, overwrite = TRUE, append = FALSE)
>>>>>>> refs/remotes/origin/main
#> $f_drift
#> [1] 0
#>
#> $eq_rate_drift_s
#> [1] 3000
#>
#> $eq_rate_rd_s
#> [1] 3000
#>
#> $eq_rate_rd_parent_s
#> [1] NA
#>
#> $input_drift_s
#> [1] 0
#>
#> $input_rd_s
#> [1] 300
#>
#> $f_rd_sw
#> [1] 0.6850566
#>
#> $f_rd_sed
#> [1] 0.3149434
#>
#> $PEC
#> type
#> Time PECsw TWAECsw PECsed TWAECsed
#> 0 6.850566e+02 NA 2.362075e+03 NA
#> 1 6.103161e+02 647.68635 2.104370e+03 2233.2225
#> 2 5.437298e+02 612.03420 1.874780e+03 2110.2939
#> 4 4.315586e+02 548.76030 1.488014e+03 1892.1255
#> 7 3.051580e+02 469.88375 1.052185e+03 1620.1592
#> 14 1.359325e+02 339.57370 4.686951e+02 1170.8501
#> 21 6.055102e+01 257.45458 2.087799e+02 887.7034
#> 28 2.697241e+01 203.47173 9.300089e+01 701.5705
#> 42 5.352005e+00 140.10377 1.845371e+01 483.0778
#> 50 2.123945e+00 118.24602 7.323361e+00 407.7123
#> 100 6.585062e-03 59.30629 2.270529e-02 204.4881
#>
#> $PEC_sw_max
#> [1] 685.0566
#>
#> $PEC_sed_max
#> [1] 2362.075
#>
# Metabolite
new_dummy <- chent_focus_sw("New Dummy", mw = 250, Koc = 100)
M1 <- chent_focus_sw("M1", mw = 100, cwsat = 100, DT50_ws = 100, Koc = 50,
max_ws = 0, max_soil = 0.5)
PEC_sw_focus(new_dummy, 1000, scenario = "cereals, winter", met = M1)
#> $f_drift
#> [1] 0.02759
#>
#> $eq_rate_drift_s
#> [1] 0
#>
#> $eq_rate_rd_s
#> [1] 200
#>
#> $eq_rate_rd_parent_s
#> [1] 0
#>
#> $input_drift_s
#> [1] 0
#>
#> $input_rd_s
#> [1] 20
#>
#> $f_rd_sw
#> [1] 0.9375
#>
#> $f_rd_sed
#> [1] 0.0625
#>
#> $PEC
#> type
#> Time PECsw TWAECsw PECsed TWAECsed
#> 0 62.50000 NA 31.25000 NA
#> 1 62.06828 62.28414 31.03414 31.14207
#> 2 61.63954 62.06890 30.81977 31.03445
#> 4 60.79093 61.64158 30.39547 30.82079
#> 7 59.53987 61.00800 29.76994 30.50400
#> 14 56.71995 59.56326 28.35997 29.78163
#> 21 54.03358 58.16414 27.01679 29.08207
#> 28 51.47444 56.80902 25.73722 28.40451
#> 42 46.71404 54.22460 23.35702 27.11230
#> 50 44.19417 52.81945 22.09709 26.40973
#> 100 31.25000 45.08422 15.62500 22.54211
#>
#> $PEC_sw_max
#> [1] 62.5
#>
#> $PEC_sed_max
#> [1] 31.25
#>