R6 class for holding TOXSWA water concentration data and associated statistics

An R6 class for holding TOXSWA water concentration (cwa) data and some associated statistics. Usually, an instance of this class will be generated by read.TOXSWA_cwa.

TOXSWA_cwa

Format

An R6Class generator object.

Fields

filename

Length one character vector.

basedir

Length one character vector.

segment

Length one integer, specifying for which segment the cwa data were read.

cwas

Dataframe holding the concentrations.

events

List of dataframes holding the event statistics for each threshold.

windows

Matrix of maximum time weighted average concentrations (TWAC_max) and areas under the curve in µg/day * h (AUC_max_h) or µg/day * d (AUC_max_d) for the requested moving window sizes in days.

Methods

get_events(threshold, total = FALSE)

Populate a datataframe with event information for the specified threshold value in µg/L. If total = TRUE, the total concentration including the amount adsorbed to suspended matter will be used. The resulting dataframe is stored in the events field of the object.

moving_windows(windows, total = FALSE)

Add to the windows field described above. Again, if total = TRUE, the total concentration including the amount adsorbed to suspended matter will be used.

Examples

H_sw_R1_stream  <- read.TOXSWA_cwa("00003s_pa.cwa",
                                 basedir = "SwashProjects/project_H_sw/TOXSWA",
                                 zipfile = system.file("testdata/SwashProjects.zip",
                                             package = "pfm"))
H_sw_R1_stream$get_events(c(2, 10))
H_sw_R1_stream$moving_windows(c(7, 21))
print(H_sw_R1_stream)
#> <TOXSWA_cwa> data from file 00003s_pa.cwa segment 20 
#>                datetime     t t_firstjan t_rel_to_max cwa_mug_per_L
#> 20  1978-10-01 00:00:00 0.000   273.0000      -55.333             0
#> 40  1978-10-01 01:00:00 0.042   273.0417      -55.291             0
#> 60  1978-10-01 02:00:00 0.083   273.0833      -55.250             0
#> 80  1978-10-01 03:00:00 0.125   273.1250      -55.208             0
#> 100 1978-10-01 04:00:00 0.167   273.1667      -55.166             0
#> 120 1978-10-01 05:00:00 0.208   273.2083      -55.125             0
#>     cwa_tot_mug_per_L
#> 20                  0
#> 40                  0
#> 60                  0
#> 80                  0
#> 100                 0
#> 120                 0
#> Moving window analysis
#>    window  max_TWAC max_AUC_h max_AUC_d
#> 1  7 days 2.3926551  401.9660  16.74859
#> 2 21 days 0.8369248  421.8101  17.57542
#> Event statistics for threshold 2 
#>   t_start   cwa_max duration pre_interval     AUC_h     AUC_d
#> 1  44.375  4.167238    0.208       44.375  17.77202  0.740501
#> 2  55.042 40.584010    0.583       10.459 398.21189 16.592162
#> Event statistics for threshold 10 
#>   t_start  cwa_max duration pre_interval   AUC_h    AUC_d
#> 1  55.083 40.58401    0.459       55.083 379.433 15.80971