library(pfm) context("Read and analyse TOXSWA cwa files") zipfile_test = system.file("testdata/SwashProjects.zip", package = "pfm") basedir_test = "SwashProjects/project_H_sw/TOXSWA" H_sw_D4_pond <- read.TOXSWA_cwa("00001p_pa.cwa", basedir = basedir_test, zipfile = zipfile_test) H_sw_R1_stream <- read.TOXSWA_cwa("00003s_pa.cwa", basedir = basedir_test, zipfile = zipfile_test) basedir_test_2 = "SwashProjects/Project_1/TOXSWA" EXSW2_R1_stream <- read.TOXSWA_cwa("3.out", basedir = basedir_test_2, zipfile = zipfile_test) test_that("TOXSWA cwa file is correctly read and printed", { # This was the setting when printing the output into text files options(width = 100) # Most content of the R6 object is at least partially printed H_sw_D4_pond_printed <- capture.output(print(H_sw_D4_pond)) expect_equal(H_sw_D4_pond_printed, readLines("H_sw_D4_pond_printed.txt")) H_sw_R1_stream_printed <- capture.output(print(H_sw_R1_stream)) expect_equal(H_sw_R1_stream_printed, readLines("H_sw_R1_stream_printed.txt")) # The basedir is not printed, therefore tested separately expect_equal(H_sw_D4_pond$basedir, basedir_test) EXSW2_R1_stream_printed <- capture.output(print(EXSW2_R1_stream)) expect_equal(EXSW2_R1_stream_printed, readLines("EXSW2_R1_stream_printed.txt")) # The basedir is not printed, therefore tested separately expect_equal(H_sw_D4_pond$basedir, basedir_test) }) test_that("Getting events and moving window analysis works", { # Event analysis with two different thresholds H_sw_R1_stream$get_events(c(2, 10)) expect_equal_to_reference(H_sw_R1_stream$events, file = "H_sw_R1_stream_events.rds") # Moving window analysis H_sw_R1_stream$moving_windows(c(7, 21)) expect_equal_to_reference(H_sw_R1_stream$windows, file = "H_sw_R1_stream_windows.rds") })