#!/bin/bash # Script to automate backporting r-base for CRAN # Author: Johannes Ranke # Developed in parallel with Vincent Goulet # On Debian I used to run this script as root. On Ubuntu I now run it with # sudo -E sh backport_r-base.sh # Preconditions: - shell variables DIST and ARCH # - sid sources in /etc/apt/sources/list # - cdbs installed (and maybe more) export DEBEMAIL="jranke@uni-bremen.de" export DEBFULLNAME="Johannes Ranke" echo Distribution is $DIST echo Architecture is $ARCH if [ -d r-base-* ] then rm -rf `ls -d r-base-*` fi apt-get update apt-get source -t unstable r-base # Change any ~ in the name of the build directory for a - to avoid a # bug in texi2dvi. Thanks Vincent if [ -d r-base-*~* ] then dir=`ls -d r-base-*~*` mv $dir `echo $dir | sed y/~/-/` fi cd r-base-* # Old version oldversion=`dpkg-parsechangelog | grep ^Version | cut -f2 -d " "` cranversion=$oldversion"~"$DIST"cran.0" echo Old version is $oldversion echo CRAN version is $cranversion # Add new version to changelog dch -v "${cranversion}" --force-distribution -D $DIST-cran -b "Backport from Debian unstable to Debian $DIST" # Reverts for lenny and etch: # 1. Starting with Debian packages for R 2.9.2 there is a build dependency # on debhelper >= 7.2.3, which is not in lenny nor etch This also means we # have to reinclude debian/r-doc-{info,html}.{postinst,prerm}, thanks Dirk # for pointing this out. sed -i '/^Build-Depends/s/debhelper (>= 7.2.3)/debhelper/' debian/control dch -a "debian/control: revert Build-Depends: to 'debhelper' since $DIST has a version < 7.2.3" sed -i 's/dh_prep/dh_clean/g' debian/rules dch -a "debian/rules: revert dh_prep calls to dh_clean calls since the latter is not present in this release's version of 'debhelper'" # 2. Starting with Debian packages for R 2.9.2-2 there is an install # dependency on 'dpkg (>= 1.15.4) | install-info'. Neither package is in # Debian releases etch nor lenny. This also requires to reinclude # debian/r-doc-{info,html}.{postinst,prerm}, just like for the fix above. sed -i '/^Depends/s/dpkg (>= 1.15.4) | install-info/dpkg | install-info/' debian/control dch -a "debian/control: revert Depends: to 'dpkg | install-info' for r-doc-info since ${DISTRIB_DESCRIPTION} has a version of dpkg < 1.15.4 and no separate package install-info" # Reverts for etch only: if [ $DIST = "etch" ] then # 1. Starting with Debian packages for R 2.6.1-2, the build dependency # to 'refblas3-dev|atlas3-base-dev' is changed to 'libblas-dev' to # use the new gfortran-built BLAS libraries. From R 2.7.0, the # dependency is on 'libblas-dev | libatlas-base-dev' for # r-base-dev. sed -i '/^Build-Depends/s/libblas-dev/refblas3-dev|atlas3-base-dev/' debian/control sed -i '/^Depends/s/libblas-dev | libatlas-base-dev/refblas3-dev|atlas3-base-dev/' debian/control dch -a "debian/control: revert Build-Depends: to 'refblas3-dev|atlas3-base-dev' and Depends: to 'refblas3-dev|atlas3-base-dev' since etch does not have the new gfortran-built BLAS libraries" # 2. Starting with Debian packages for R 2.6.2, new build dependency # on liblapack-dev to switch back to using Debian's Lapack rather # than the version supplied by R. From R 2.7.0, the dependency is # on 'liblapack-dev (>= 3.1.1)' for r-base and 'liblapack-dev | # libatlas-base-dev' for r-base-dev. sed -i '/^Build-Depends/s/liblapack-dev (>= 3.1.1), //' debian/control sed -i '/^Depends/s/liblapack-dev | libatlas-base-dev, //' debian/control dch -a "debian/control: revert Build-Depends: and Depends: fields since we use the Lapack supplied with R" sed -i '/^lapack/{ s/lapack/\#lapack/ a\ # jr 24 Apr 2008 Set to =no for Debian etch a\lapack = --with-lapack=no }' debian/rules dch -a "debian/rules: Accordingly, do not configure --with-lapack" # 3. Requirement for tk8.4 >= 8.4.16-2 introduced in r-base 2.6.0-4 to # circumvent a breakage with 8.4.16-1. The version in etch is 8.4.12-1etch2. rm debian/shlibs.local dch -a "delete debian/shlibs.local since the dependency on tk8.4 is not an issue for Debian etch" # 4. The TeX distribution in etch is tetex sed -i '/^Build-Depends/s/texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, texinfo, texi2html/tetex-bin, tetex-extra/' debian/control dch -a "debian/control: revert Build-Depends: to 'tetex-bin, tetex-extra' since etch does not have texlive" # 5. xauth is part of xbase-clients in etch sed -i '/^Build-Depends/s/xauth/xbase-clients/' debian/control dch -a "debian/control: replace xauth by xbase-clients in Build-Depends:" # 6. Tcl and TK are 8.4 on Debian etch sed -i '/^Build-Depends/s/ tcl8.5-dev/tcl8.4-dev/' debian/control sed -i '/^Build-Depends/s/ tk8.5-dev/tk8.4-dev/' debian/control dch -a "debian/control: revert build dependence for tcl/tk to 8.4" # 7. Openjdk is not in etch sed -i '/^Build-Depends/s/, openjdk-6-jdk \[!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386\]//' debian/control dch -a "debian/control: Remove build dependence on openjdk" # 8. Debhelper in etch is 5.0.42 echo 5 > debian/compat dch -a "debian/compat: revert 'debhelper' compatibility level to 5" # 9. R 2.9.0 wants ucf >= 3.0 which is not available in etch (2.0020) sed -i 's/ucf (>= 3.0)/ucf/' debian/control dch -a "debian/control: revert Depends: of r-base-core to 'ucf' since the version in etch is < 3.0" fi pbuilder update pdebuild --debbuildopts '-sa' --buildresult /home/ranke/svn/website/www/ranke/r-cran/$DIST-cran/ -- --distribution $DIST --basetgz /var/cache/pbuilder/$DIST-$ARCH-base.tgz --aptcache /var/cache/pbuilder/$DIST-$ARCH/aptcache --buildplace /var/cache/pbuilder/$DIST-$ARCH/build if [ $? -ne 0 ]; then exit fi cd ..