diff options
Diffstat (limited to 'branches/0.1/chemCal/inst/doc/chemCal.log')
| -rw-r--r-- | branches/0.1/chemCal/inst/doc/chemCal.log | 253 |
1 files changed, 108 insertions, 145 deletions
diff --git a/branches/0.1/chemCal/inst/doc/chemCal.log b/branches/0.1/chemCal/inst/doc/chemCal.log index a21c788..31eced3 100644 --- a/branches/0.1/chemCal/inst/doc/chemCal.log +++ b/branches/0.1/chemCal/inst/doc/chemCal.log @@ -1,17 +1,15 @@ -This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4) (format=pdflatex 2006.5.30) 23 JUN 2006 18:41 +This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) (format=pdflatex 2007.9.10) 1 OCT 2007 22:14 entering extended mode + %&-line parsing enabled. **chemCal.tex (./chemCal.tex -LaTeX2e <2003/12/01> -Babel <v3.8d> and hyphenation patterns for american, french, german, ngerman, b -ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch, esperanto, e -stonian, finnish, greek, icelandic, irish, italian, latin, magyar, norsk, polis -h, portuges, romanian, russian, serbian, slovak, slovene, spanish, swedish, tur -kish, ukrainian, nohyphenation, loaded. -(/usr/share/texmf-tetex/tex/latex/base/article.cls -Document Class: article 2004/02/16 v1.4f Standard LaTeX document class -(/usr/share/texmf-tetex/tex/latex/base/size10.clo -File: size10.clo 2004/02/16 v1.4f Standard LaTeX file (size option) +LaTeX2e <2005/12/01> +Babel <v3.8h> and hyphenation patterns for english, usenglishmax, dumylang, noh +yphenation, german, ngerman, loaded. +(/usr/share/texmf-texlive/tex/latex/base/article.cls +Document Class: article 2005/09/16 v1.4f Standard LaTeX document class +(/usr/share/texmf-texlive/tex/latex/base/size10.clo +File: size10.clo 2005/09/16 v1.4f Standard LaTeX file (size option) ) \c@part=\count79 \c@section=\count80 @@ -25,10 +23,10 @@ File: size10.clo 2004/02/16 v1.4f Standard LaTeX file (size option) \belowcaptionskip=\skip42 \bibindent=\dimen102 ) -(/usr/share/texmf-tetex/tex/latex/hyperref/hyperref.sty -Package: hyperref 2003/11/30 v6.74m Hypertext links for LaTeX +(/usr/share/texmf-texlive/tex/latex/hyperref/hyperref.sty +Package: hyperref 2007/02/07 v6.75r Hypertext links for LaTeX -(/usr/share/texmf-tetex/tex/latex/graphics/keyval.sty +(/usr/share/texmf-texlive/tex/latex/graphics/keyval.sty Package: keyval 1999/03/16 v1.13 key=value parser (DPC) \KV@toks@=\toks14 ) @@ -36,56 +34,47 @@ Package: keyval 1999/03/16 v1.13 key=value parser (DPC) \Hy@linkcounter=\count87 \Hy@pagecounter=\count88 -(/usr/share/texmf-tetex/tex/latex/hyperref/pd1enc.def -File: pd1enc.def 2003/11/30 v6.74m Hyperref: PDFDocEncoding definition (HO) +(/usr/share/texmf-texlive/tex/latex/hyperref/pd1enc.def +File: pd1enc.def 2007/02/07 v6.75r Hyperref: PDFDocEncoding definition (HO) ) -(/usr/share/texmf-tetex/tex/latex/hyperref/hyperref.cfg -File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive and teTeX +(/etc/texmf/tex/latex/config/hyperref.cfg +File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive ) -Package hyperref Info: Hyper figures OFF on input line 1880. -Package hyperref Info: Link nesting OFF on input line 1885. -Package hyperref Info: Hyper index ON on input line 1888. -Package hyperref Info: Plain pages ON on input line 1893. -Package hyperref Info: Backreferencing OFF on input line 1900. +(/usr/share/texmf-texlive/tex/latex/oberdiek/kvoptions.sty +Package: kvoptions 2006/08/22 v2.4 Connects package keyval with LaTeX options ( +HO) +) +Package hyperref Info: Hyper figures OFF on input line 2288. +Package hyperref Info: Link nesting OFF on input line 2293. +Package hyperref Info: Hyper index ON on input line 2296. +Package hyperref Info: Plain pages OFF on input line 2303. +Package hyperref Info: Backreferencing OFF on input line 2308. Implicit mode ON; LaTeX internals redefined -Package hyperref Info: Bookmarks ON on input line 2004. -(/usr/share/texmf-tetex/tex/latex/url/url.sty +Package hyperref Info: Bookmarks ON on input line 2444. +(/usr/share/texmf-texlive/tex/latex/ltxmisc/url.sty \Urlmuskip=\muskip10 -Package: url 2004/03/15 ver 3.1 Verb mode for urls, etc. +Package: url 2005/06/27 ver 3.2 Verb mode for urls, etc. ) -LaTeX Info: Redefining \url on input line 2143. +LaTeX Info: Redefining \url on input line 2599. \Fld@menulength=\count89 \Field@Width=\dimen104 \Fld@charsize=\dimen105 \Choice@toks=\toks15 \Field@toks=\toks16 -Package hyperref Info: Hyper figures OFF on input line 2618. -Package hyperref Info: Link nesting OFF on input line 2623. -Package hyperref Info: Hyper index ON on input line 2626. -Package hyperref Info: backreferencing OFF on input line 2633. -Package hyperref Info: Link coloring OFF on input line 2638. -\c@Item=\count90 -\c@Hfootnote=\count91 +Package hyperref Info: Hyper figures OFF on input line 3102. +Package hyperref Info: Link nesting OFF on input line 3107. +Package hyperref Info: Hyper index ON on input line 3110. +Package hyperref Info: backreferencing OFF on input line 3117. +Package hyperref Info: Link coloring OFF on input line 3122. +\Hy@abspage=\count90 +\c@Item=\count91 +\c@Hfootnote=\count92 ) *hyperref using default driver hpdftex* -(/usr/share/texmf-tetex/tex/latex/hyperref/hpdftex.def -File: hpdftex.def 2003/11/30 v6.74m Hyperref driver for pdfTeX - -(/usr/share/texmf-tetex/tex/latex/psnfss/pifont.sty -Package: pifont 2004/09/15 PSNFSS-v9.2 Pi font support (SPQR) -LaTeX Font Info: Try loading font information for U+pzd on input line 63. - -(/usr/share/texmf-tetex/tex/latex/psnfss/upzd.fd -File: upzd.fd 2001/06/04 font definitions for U/pzd. -) -LaTeX Font Info: Try loading font information for U+psy on input line 64. - -(/usr/share/texmf-tetex/tex/latex/psnfss/upsy.fd -File: upsy.fd 2001/06/04 font definitions for U/psy. -)) -\Fld@listcount=\count92 -\@outlinefile=\write3 +(/usr/share/texmf-texlive/tex/latex/hyperref/hpdftex.def +File: hpdftex.def 2007/02/07 v6.75r Hyperref driver for pdfTeX +\Fld@listcount=\count93 ) (/usr/share/R/share/texmf/Sweave.sty @@ -93,48 +82,48 @@ LaTeX Warning: You have requested package `/usr/share/R/share/texmf/Sweave', but the package provides `Sweave'. Package: Sweave -(/usr/share/texmf-tetex/tex/latex/base/ifthen.sty +(/usr/share/texmf-texlive/tex/latex/base/ifthen.sty Package: ifthen 2001/05/26 v1.1c Standard LaTeX ifthen package (DPC) ) -(/usr/share/texmf-tetex/tex/latex/graphics/graphicx.sty +(/usr/share/texmf-texlive/tex/latex/graphics/graphicx.sty Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR) -(/usr/share/texmf-tetex/tex/latex/graphics/graphics.sty -Package: graphics 2001/07/07 v1.0n Standard LaTeX Graphics (DPC,SPQR) +(/usr/share/texmf-texlive/tex/latex/graphics/graphics.sty +Package: graphics 2006/02/20 v1.0o Standard LaTeX Graphics (DPC,SPQR) -(/usr/share/texmf-tetex/tex/latex/graphics/trig.sty +(/usr/share/texmf-texlive/tex/latex/graphics/trig.sty Package: trig 1999/03/16 v1.09 sin cos tan (DPC) ) -(/usr/share/texmf-tetex/tex/latex/graphics/graphics.cfg -File: graphics.cfg 2005/02/03 v1.3 graphics configuration of teTeX/TeXLive +(/etc/texmf/tex/latex/config/graphics.cfg +File: graphics.cfg 2007/01/18 v1.5 graphics configuration of teTeX/TeXLive ) -Package graphics Info: Driver file: pdftex.def on input line 80. +Package graphics Info: Driver file: pdftex.def on input line 90. -(/usr/share/texmf-tetex/tex/latex/graphics/pdftex.def -File: pdftex.def 2002/06/19 v0.03k graphics/color for pdftex -\Gread@gobject=\count93 +(/usr/share/texmf-texlive/tex/latex/pdftex-def/pdftex.def +File: pdftex.def 2007/01/08 v0.04d Graphics/color for pdfTeX +\Gread@gobject=\count94 )) \Gin@req@height=\dimen106 \Gin@req@width=\dimen107 ) -(/usr/share/texmf-tetex/tex/latex/fancyvrb/fancyvrb.sty +(/usr/share/texmf-texlive/tex/latex/fancyvrb/fancyvrb.sty Package: fancyvrb 1998/07/17 Style option: `fancyvrb' v2.6, with DG/SPQR fixes <1998/07/17> (tvz) -\FV@CodeLineNo=\count94 +\FV@CodeLineNo=\count95 \FV@InFile=\read1 \FV@TabBox=\box26 -\c@FancyVerbLine=\count95 -\FV@StepNumber=\count96 -\FV@OutFile=\write4 +\c@FancyVerbLine=\count96 +\FV@StepNumber=\count97 +\FV@OutFile=\write3 No file fancyvrb.cfg. ) (/usr/share/R/share/texmf/upquote.sty Package: upquote 2003/08/11 v1.1 Covington's upright-quote modification to verb atim and verb -(/usr/share/texmf-tetex/tex/latex/base/textcomp.sty -Package: textcomp 2004/02/22 v1.99f Standard LaTeX package +(/usr/share/texmf-texlive/tex/latex/base/textcomp.sty +Package: textcomp 2005/09/27 v1.99g Standard LaTeX package Package textcomp Info: Sub-encoding information: (textcomp) 5 = only ISO-Adobe without \textcurrency (textcomp) 4 = 5 + \texteuro @@ -148,7 +137,7 @@ Package textcomp Info: Sub-encoding information: (textcomp) See the documentation for details. Package textcomp Info: Setting ? sub-encoding to TS1/1 on input line 71. -(/usr/share/texmf-tetex/tex/latex/base/ts1enc.def +(/usr/share/texmf-texlive/tex/latex/base/ts1enc.def File: ts1enc.def 2001/06/05 v3.0e (jk/car/fm) Standard LaTeX file ) LaTeX Info: Redefining \oldstylenums on input line 266. @@ -200,26 +189,26 @@ Package textcomp Info: Setting pplj sub-encoding to TS1/3 on input line 324. Package textcomp Info: Setting ptmx sub-encoding to TS1/4 on input line 325. Package textcomp Info: Setting ptmj sub-encoding to TS1/4 on input line 326. )) -(/usr/share/texmf-tetex/tex/latex/base/fontenc.sty -Package: fontenc 2004/02/22 v1.99f Standard LaTeX package +(/usr/share/texmf-texlive/tex/latex/base/fontenc.sty +Package: fontenc 2005/09/27 v1.99g Standard LaTeX package -(/usr/share/texmf-tetex/tex/latex/base/t1enc.def -File: t1enc.def 2004/02/22 v1.99f Standard LaTeX file +(/usr/share/texmf-texlive/tex/latex/base/t1enc.def +File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file LaTeX Font Info: Redeclaring font encoding T1 on input line 43. )) -(/usr/share/texmf-tetex/tex/latex/ae/ae.sty +(/usr/share/texmf-texlive/tex/latex/ae/ae.sty Package: ae 2001/02/12 1.3 Almost European Computer Modern -(/usr/share/texmf-tetex/tex/latex/base/fontenc.sty -Package: fontenc 2004/02/22 v1.99f Standard LaTeX package +(/usr/share/texmf-texlive/tex/latex/base/fontenc.sty +Package: fontenc 2005/09/27 v1.99g Standard LaTeX package -(/usr/share/texmf-tetex/tex/latex/base/t1enc.def -File: t1enc.def 2004/02/22 v1.99f Standard LaTeX file +(/usr/share/texmf-texlive/tex/latex/base/t1enc.def +File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file LaTeX Font Info: Redeclaring font encoding T1 on input line 43. ) LaTeX Font Info: Try loading font information for T1+aer on input line 100. -(/usr/share/texmf-tetex/tex/latex/ae/t1aer.fd +(/usr/share/texmf-texlive/tex/latex/ae/t1aer.fd File: t1aer.fd 1997/11/16 Font definitions for T1/aer. )))) (./chemCal.aux) \openout1 = `chemCal.aux'. @@ -241,56 +230,27 @@ LaTeX Font Info: ... okay on input line 9. LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 9. LaTeX Font Info: Try loading font information for TS1+cmr on input line 9. -(/usr/share/texmf-tetex/tex/latex/base/ts1cmr.fd +(/usr/share/texmf-texlive/tex/latex/base/ts1cmr.fd File: ts1cmr.fd 1999/05/25 v2.5h Standard LaTeX font definitions ) LaTeX Font Info: ... okay on input line 9. Package hyperref Info: Link coloring OFF on input line 9. -(/usr/share/texmf-tetex/tex/latex/hyperref/nameref.sty -Package: nameref 2003/12/03 v2.21 Cross-referencing by name of section -\c@section@level=\count97 +(/usr/share/texmf-texlive/tex/latex/hyperref/nameref.sty +Package: nameref 2006/12/27 v2.28 Cross-referencing by name of section + +(/usr/share/texmf-texlive/tex/latex/oberdiek/refcount.sty +Package: refcount 2006/02/20 v3.0 Data extraction from references (HO) +) +\c@section@level=\count98 ) LaTeX Info: Redefining \ref on input line 9. LaTeX Info: Redefining \pageref on input line 9. (./chemCal.out) (./chemCal.out) -\openout3 = `chemCal.out'. +\@outlinefile=\write4 +\openout4 = `chemCal.out'. - (/usr/share/texmf-tetex/tex/context/base/supp-pdf.tex -(/usr/share/texmf-tetex/tex/context/base/supp-mis.tex -loading : Context Support Macros / Miscellaneous (2004.10.26) -\protectiondepth=\count98 -\scratchcounter=\count99 -\scratchtoks=\toks17 -\scratchdimen=\dimen108 -\scratchskip=\skip43 -\scratchmuskip=\muskip11 -\scratchbox=\box27 -\scratchread=\read2 -\scratchwrite=\write5 -\zeropoint=\dimen109 -\onepoint=\dimen110 -\onebasepoint=\dimen111 -\minusone=\count100 -\thousandpoint=\dimen112 -\onerealpoint=\dimen113 -\emptytoks=\toks18 -\nextbox=\box28 -\nextdepth=\dimen114 -\everyline=\toks19 -\!!counta=\count101 -\!!countb=\count102 -\recursecounter=\count103 -) -loading : Context Support Macros / PDF (2004.03.26) -\nofMPsegments=\count104 -\nofMParguments=\count105 -\MPscratchCnt=\count106 -\MPscratchDim=\dimen115 -\MPnumerator=\count107 -\everyMPtoPDFconversion=\toks20 -) LaTeX Font Info: External font `cmex10' loaded for size (Font) <12> on input line 11. LaTeX Font Info: External font `cmex10' loaded for size @@ -298,15 +258,15 @@ LaTeX Font Info: External font `cmex10' loaded for size LaTeX Font Info: External font `cmex10' loaded for size (Font) <6> on input line 11. LaTeX Font Info: Try loading font information for T1+aett on input line 12. - (/usr/share/texmf-tetex/tex/latex/ae/t1aett.fd + (/usr/share/texmf-texlive/tex/latex/ae/t1aett.fd File: t1aett.fd 1997/11/16 Font definitions for T1/aett. ) -<chemCal-001.pdf, id=7, 433.62pt x 433.62pt> +<chemCal-001.pdf, id=9, 433.62pt x 433.62pt> File: chemCal-001.pdf Graphic file (type pdf) <use chemCal-001.pdf> [1 {/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] -<chemCal-002.pdf, id=31, 433.62pt x 433.62pt> +<chemCal-002.pdf, id=21, 433.62pt x 433.62pt> File: chemCal-002.pdf Graphic file (type pdf) <use chemCal-002.pdf> [2 <./chemCal-001.pdf>] LaTeX Font Info: Try loading font information for TS1+aett on input line 86. @@ -317,7 +277,7 @@ File: ts1aett.fd LaTeX Font Info: Try loading font information for TS1+cmtt on input line 86. -(/usr/share/texmf-tetex/tex/latex/base/ts1cmtt.fd +(/usr/share/texmf-texlive/tex/latex/base/ts1cmtt.fd File: ts1cmtt.fd 1999/05/25 v2.5h Standard LaTeX font definitions ) LaTeX Font Info: Font shape `TS1/aett/m/n' in size <10> not available @@ -337,26 +297,29 @@ LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) Here is how much of TeX's memory you used: - 3773 strings out of 94499 - 51971 string characters out of 1175813 - 97245 words of memory out of 1000000 - 6867 multiletter control sequences out of 10000+50000 - 22264 words of font info for 54 fonts, out of 500000 for 2000 - 580 hyphenation exceptions out of 8191 - 35i,7n,21p,255b,283s stack positions out of 1500i,500n,5000p,200000b,5000s + 3681 strings out of 95070 + 51909 string characters out of 1182680 + 101753 words of memory out of 1500000 + 6791 multiletter control sequences out of 10000+50000 + 21574 words of font info for 52 fonts, out of 1200000 for 2000 + 28 hyphenation exceptions out of 8191 + 35i,7n,21p,255b,466s stack positions out of 5000i,500n,6000p,200000b,5000s +{/usr/share/texmf/fonts/enc/dvips/cm-super/cm-super-ts1.enc}</usr/share/texmf +-texlive/fonts/type1/bluesky/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type +1/bluesky/cm/cmex10.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmmi10 +.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmmi5.pfb></usr/share/tex +mf-texlive/fonts/type1/bluesky/cm/cmmi7.pfb></usr/share/texmf-texlive/fonts/typ +e1/bluesky/cm/cmr10.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmr12. +pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmr17.pfb></usr/share/texm +f-texlive/fonts/type1/bluesky/cm/cmr5.pfb></usr/share/texmf-texlive/fonts/type1 +/bluesky/cm/cmr7.pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmsltt10. +pfb></usr/share/texmf-texlive/fonts/type1/bluesky/cm/cmsy10.pfb></usr/share/tex +mf-texlive/fonts/type1/bluesky/cm/cmtt10.pfb></usr/share/texmf-texlive/fonts/ty +pe1/bluesky/cm/cmtt12.pfb></usr/share/texmf/fonts/type1/public/cm-super/sftt100 +0.pfb> +Output written on chemCal.pdf (5 pages, 123575 bytes). 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