path: root/branches/0.1/chemCal/vignettes/chemCal.log

This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian) (format=pdflatex 2012.6.4)  11 SEP 2012 23:05
entering extended mode
 %&-line parsing enabled.
**chemCal.tex
(./chemCal.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, usenglishmax, dumylang, noh
yphenation, ngerman, german, german-x-2009-06-19, ngerman-x-2009-06-19, loaded.

(/usr/share/texmf-texlive/tex/latex/base/article.cls
Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texmf-texlive/tex/latex/base/size10.clo
File: size10.clo 2007/10/19 v1.4h Standard LaTeX file (size option)
)
\c@part=\count79
\c@section=\count80
\c@subsection=\count81
\c@subsubsection=\count82
\c@paragraph=\count83
\c@subparagraph=\count84
\c@figure=\count85
\c@table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(/usr/share/texmf-texlive/tex/latex/hyperref/hyperref.sty
Package: hyperref 2009/10/09 v6.79a Hypertext links for LaTeX

(/usr/share/texmf-texlive/tex/latex/graphics/keyval.sty
Package: keyval 1999/03/16 v1.13 key=value parser (DPC)
\KV@toks@=\toks14
)
(/usr/share/texmf-texlive/tex/generic/oberdiek/ifpdf.sty
Package: ifpdf 2009/04/10 v2.0 Provides the ifpdf switch (HO)
Package ifpdf Info: pdfTeX in pdf mode detected.
)
(/usr/share/texmf-texlive/tex/generic/oberdiek/ifvtex.sty
Package: ifvtex 2008/11/04 v1.4 Switches for detecting VTeX and its modes (HO)
Package ifvtex Info: VTeX not detected.
)
(/usr/share/texmf-texlive/tex/generic/ifxetex/ifxetex.sty
Package: ifxetex 2009/01/23 v0.5 Provides ifxetex conditional
)
(/usr/share/texmf-texlive/tex/latex/oberdiek/hycolor.sty
Package: hycolor 2009/10/02 v1.5 Code for color options of hyperref/bookmark (H
O)

(/usr/share/texmf-texlive/tex/latex/oberdiek/xcolor-patch.sty
Package: xcolor-patch 2009/10/02 xcolor patch
))
\@linkdim=\dimen103
\Hy@linkcounter=\count87
\Hy@pagecounter=\count88

(/usr/share/texmf-texlive/tex/latex/hyperref/pd1enc.def
File: pd1enc.def 2009/10/09 v6.79a Hyperref: PDFDocEncoding definition (HO)
)
(/usr/share/texmf-texlive/tex/generic/oberdiek/etexcmds.sty
Package: etexcmds 2007/12/12 v1.2 Prefix for e-TeX command names (HO)

(/usr/share/texmf-texlive/tex/generic/oberdiek/infwarerr.sty
Package: infwarerr 2007/09/09 v1.2 Providing info/warning/message (HO)
)
Package etexcmds Info: Could not find \expanded.
(etexcmds)             That can mean that you are not using pdfTeX 1.50 or
(etexcmds)             that some package has redefined \expanded.
(etexcmds)             In the latter case, load this package earlier.
)
(/usr/share/texmf-texlive/tex/latex/latexconfig/hyperref.cfg
File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive
)
(/usr/share/texmf-texlive/tex/latex/oberdiek/kvoptions.sty
Package: kvoptions 2009/08/13 v3.4 Keyval support for LaTeX options (HO)

(/usr/share/texmf-texlive/tex/generic/oberdiek/kvsetkeys.sty
Package: kvsetkeys 2009/07/30 v1.5 Key value parser with default handler suppor
t (HO)
))
Package hyperref Info: Hyper figures OFF on input line 2975.
Package hyperref Info: Link nesting OFF on input line 2980.
Package hyperref Info: Hyper index ON on input line 2983.
Package hyperref Info: Plain pages OFF on input line 2990.
Package hyperref Info: Backreferencing OFF on input line 2995.

Implicit mode ON; LaTeX internals redefined
Package hyperref Info: Bookmarks ON on input line 3191.
(/usr/share/texmf-texlive/tex/latex/ltxmisc/url.sty
\Urlmuskip=\muskip10
Package: url 2006/04/12  ver 3.3  Verb mode for urls, etc.
)
LaTeX Info: Redefining \url on input line 3428.

(/usr/share/texmf-texlive/tex/generic/oberdiek/bitset.sty
Package: bitset 2007/09/28 v1.0 Data type bit set (HO)

(/usr/share/texmf-texlive/tex/generic/oberdiek/intcalc.sty
Package: intcalc 2007/09/27 v1.1 Expandable integer calculations (HO)
)
(/usr/share/texmf-texlive/tex/generic/oberdiek/bigintcalc.sty
Package: bigintcalc 2007/11/11 v1.1 Expandable big integer calculations (HO)

(/usr/share/texmf-texlive/tex/generic/oberdiek/pdftexcmds.sty
Package: pdftexcmds 2009/09/23 v0.6 LuaTeX support for pdfTeX utility functions
 (HO)

(/usr/share/texmf-texlive/tex/generic/oberdiek/ifluatex.sty
Package: ifluatex 2009/04/17 v1.2 Provides the ifluatex switch (HO)
Package ifluatex Info: LuaTeX not detected.
)
(/usr/share/texmf-texlive/tex/generic/oberdiek/ltxcmds.sty
Package: ltxcmds 2009/08/05 v1.0 Some LaTeX kernel commands for general use (HO
)
)
Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: \pdf@primitive is available.
Package pdftexcmds Info: \pdf@ifprimitive is available.
)))
\Fld@menulength=\count89
\Field@Width=\dimen104
\Fld@charsize=\dimen105
\Field@toks=\toks15
Package hyperref Info: Hyper figures OFF on input line 4377.
Package hyperref Info: Link nesting OFF on input line 4382.
Package hyperref Info: Hyper index ON on input line 4385.
Package hyperref Info: backreferencing OFF on input line 4392.
Package hyperref Info: Link coloring OFF on input line 4397.
Package hyperref Info: Link coloring with OCG OFF on input line 4402.
Package hyperref Info: PDF/A mode OFF on input line 4407.

(/usr/share/texmf-texlive/tex/generic/oberdiek/atbegshi.sty
Package: atbegshi 2008/07/31 v1.9 At begin shipout hook (HO)
)
\Hy@abspage=\count90
\c@Item=\count91
\c@Hfootnote=\count92
)
*hyperref using default driver hpdftex*
(/usr/share/texmf-texlive/tex/latex/hyperref/hpdftex.def
File: hpdftex.def 2009/10/09 v6.79a Hyperref driver for pdfTeX
\Fld@listcount=\count93
)
(/usr/share/texmf/tex/latex/R/tex/latex/Sweave.sty
Package: Sweave 

(/usr/share/texmf-texlive/tex/latex/base/ifthen.sty
Package: ifthen 2001/05/26 v1.1c Standard LaTeX ifthen package (DPC)
)
(/usr/share/texmf-texlive/tex/latex/graphics/graphicx.sty
Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR)

(/usr/share/texmf-texlive/tex/latex/graphics/graphics.sty
Package: graphics 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR)

(/usr/share/texmf-texlive/tex/latex/graphics/trig.sty
Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
)
(/etc/texmf/tex/latex/config/graphics.cfg
File: graphics.cfg 2009/08/28 v1.8 graphics configuration of TeX Live
)
Package graphics Info: Driver file: pdftex.def on input line 91.

(/usr/share/texmf-texlive/tex/latex/pdftex-def/pdftex.def
File: pdftex.def 2010/03/12 v0.04p Graphics/color for pdfTeX
\Gread@gobject=\count94
))
\Gin@req@height=\dimen106
\Gin@req@width=\dimen107
)
(/usr/share/texmf-texlive/tex/latex/fancyvrb/fancyvrb.sty
Package: fancyvrb 2008/02/07

Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix 
<2008/02/07> (tvz)
\FV@CodeLineNo=\count95
\FV@InFile=\read1
\FV@TabBox=\box26
\c@FancyVerbLine=\count96
\FV@StepNumber=\count97
\FV@OutFile=\write3
) (/usr/share/texmf/tex/latex/R/tex/latex/upquote.sty
Package: upquote 2003/08/11 v1.1 Covington's upright-quote modification to verb
atim and verb

(/usr/share/texmf-texlive/tex/latex/base/textcomp.sty
Package: textcomp 2005/09/27 v1.99g Standard LaTeX package
Package textcomp Info: Sub-encoding information:
(textcomp)               5 = only ISO-Adobe without \textcurrency
(textcomp)               4 = 5 + \texteuro
(textcomp)               3 = 4 + \textohm
(textcomp)               2 = 3 + \textestimated + \textcurrency
(textcomp)               1 = TS1 - \textcircled - \t
(textcomp)               0 = TS1 (full)
(textcomp)             Font families with sub-encoding setting implement
(textcomp)             only a restricted character set as indicated.
(textcomp)             Family '?' is the default used for unknown fonts.
(textcomp)             See the documentation for details.
Package textcomp Info: Setting ? sub-encoding to TS1/1 on input line 71.

(/usr/share/texmf-texlive/tex/latex/base/ts1enc.def
File: ts1enc.def 2001/06/05 v3.0e (jk/car/fm) Standard LaTeX file
)
LaTeX Info: Redefining \oldstylenums on input line 266.
Package textcomp Info: Setting cmr sub-encoding to TS1/0 on input line 281.
Package textcomp Info: Setting cmss sub-encoding to TS1/0 on input line 282.
Package textcomp Info: Setting cmtt sub-encoding to TS1/0 on input line 283.
Package textcomp Info: Setting cmvtt sub-encoding to TS1/0 on input line 284.
Package textcomp Info: Setting cmbr sub-encoding to TS1/0 on input line 285.
Package textcomp Info: Setting cmtl sub-encoding to TS1/0 on input line 286.
Package textcomp Info: Setting ccr sub-encoding to TS1/0 on input line 287.
Package textcomp Info: Setting ptm sub-encoding to TS1/4 on input line 288.
Package textcomp Info: Setting pcr sub-encoding to TS1/4 on input line 289.
Package textcomp Info: Setting phv sub-encoding to TS1/4 on input line 290.
Package textcomp Info: Setting ppl sub-encoding to TS1/3 on input line 291.
Package textcomp Info: Setting pag sub-encoding to TS1/4 on input line 292.
Package textcomp Info: Setting pbk sub-encoding to TS1/4 on input line 293.
Package textcomp Info: Setting pnc sub-encoding to TS1/4 on input line 294.
Package textcomp Info: Setting pzc sub-encoding to TS1/4 on input line 295.
Package textcomp Info: Setting bch sub-encoding to TS1/4 on input line 296.
Package textcomp Info: Setting put sub-encoding to TS1/5 on input line 297.
Package textcomp Info: Setting uag sub-encoding to TS1/5 on input line 298.
Package textcomp Info: Setting ugq sub-encoding to TS1/5 on input line 299.
Package textcomp Info: Setting ul8 sub-encoding to TS1/4 on input line 300.
Package textcomp Info: Setting ul9 sub-encoding to TS1/4 on input line 301.
Package textcomp Info: Setting augie sub-encoding to TS1/5 on input line 302.
Package textcomp Info: Setting dayrom sub-encoding to TS1/3 on input line 303.
Package textcomp Info: Setting dayroms sub-encoding to TS1/3 on input line 304.

Package textcomp Info: Setting pxr sub-encoding to TS1/0 on input line 305.
Package textcomp Info: Setting pxss sub-encoding to TS1/0 on input line 306.
Package textcomp Info: Setting pxtt sub-encoding to TS1/0 on input line 307.
Package textcomp Info: Setting txr sub-encoding to TS1/0 on input line 308.
Package textcomp Info: Setting txss sub-encoding to TS1/0 on input line 309.
Package textcomp Info: Setting txtt sub-encoding to TS1/0 on input line 310.
Package textcomp Info: Setting futs sub-encoding to TS1/4 on input line 311.
Package textcomp Info: Setting futx sub-encoding to TS1/4 on input line 312.
Package textcomp Info: Setting futj sub-encoding to TS1/4 on input line 313.
Package textcomp Info: Setting hlh sub-encoding to TS1/3 on input line 314.
Package textcomp Info: Setting hls sub-encoding to TS1/3 on input line 315.
Package textcomp Info: Setting hlst sub-encoding to TS1/3 on input line 316.
Package textcomp Info: Setting hlct sub-encoding to TS1/5 on input line 317.
Package textcomp Info: Setting hlx sub-encoding to TS1/5 on input line 318.
Package textcomp Info: Setting hlce sub-encoding to TS1/5 on input line 319.
Package textcomp Info: Setting hlcn sub-encoding to TS1/5 on input line 320.
Package textcomp Info: Setting hlcw sub-encoding to TS1/5 on input line 321.
Package textcomp Info: Setting hlcf sub-encoding to TS1/5 on input line 322.
Package textcomp Info: Setting pplx sub-encoding to TS1/3 on input line 323.
Package textcomp Info: Setting pplj sub-encoding to TS1/3 on input line 324.
Package textcomp Info: Setting ptmx sub-encoding to TS1/4 on input line 325.
Package textcomp Info: Setting ptmj sub-encoding to TS1/4 on input line 326.
))
(/usr/share/texmf-texlive/tex/latex/base/fontenc.sty
Package: fontenc 2005/09/27 v1.99g Standard LaTeX package

(/usr/share/texmf-texlive/tex/latex/base/t1enc.def
File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file
LaTeX Font Info:    Redeclaring font encoding T1 on input line 43.
))
(/usr/share/texmf-texlive/tex/latex/ae/ae.sty
Package: ae 2001/02/12 1.3 Almost European Computer Modern

(/usr/share/texmf-texlive/tex/latex/base/fontenc.sty
Package: fontenc 2005/09/27 v1.99g Standard LaTeX package

(/usr/share/texmf-texlive/tex/latex/base/t1enc.def
File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file
LaTeX Font Info:    Redeclaring font encoding T1 on input line 43.
)
LaTeX Font Info:    Try loading font information for T1+aer on input line 100.

(/usr/share/texmf-texlive/tex/latex/ae/t1aer.fd
File: t1aer.fd 1997/11/16 Font definitions for T1/aer.
)))) (./chemCal.aux)
\openout1 = `chemCal.aux'.

LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 9.
LaTeX Font Info:    ... okay on input line 9.
LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 9.
LaTeX Font Info:    ... okay on input line 9.
LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 9.
LaTeX Font Info:    ... okay on input line 9.
LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 9.
LaTeX Font Info:    ... okay on input line 9.
LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 9.
LaTeX Font Info:    ... okay on input line 9.
LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 9.
LaTeX Font Info:    ... okay on input line 9.
LaTeX Font Info:    Checking defaults for PD1/pdf/m/n on input line 9.
LaTeX Font Info:    ... okay on input line 9.
LaTeX Font Info:    Checking defaults for TS1/cmr/m/n on input line 9.
LaTeX Font Info:    Try loading font information for TS1+cmr on input line 9.

(/usr/share/texmf-texlive/tex/latex/base/ts1cmr.fd
File: ts1cmr.fd 1999/05/25 v2.5h Standard LaTeX font definitions
)
LaTeX Font Info:    ... okay on input line 9.
Package hyperref Info: Link coloring OFF on input line 9.

(/usr/share/texmf-texlive/tex/latex/hyperref/nameref.sty
Package: nameref 2007/05/29 v2.31 Cross-referencing by name of section

(/usr/share/texmf-texlive/tex/latex/oberdiek/refcount.sty
Package: refcount 2008/08/11 v3.1 Data extraction from references (HO)
)
\c@section@level=\count98
)
LaTeX Info: Redefining \ref on input line 9.
LaTeX Info: Redefining \pageref on input line 9.
 (./chemCal.out)
(./chemCal.out)
\@outlinefile=\write4
\openout4 = `chemCal.out'.

\AtBeginShipoutBox=\box27
 (/usr/share/texmf-texlive/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
\scratchcounter=\count99
\scratchdimen=\dimen108
\scratchbox=\box28
\nofMPsegments=\count100
\nofMParguments=\count101
\everyMPshowfont=\toks16
\MPscratchCnt=\count102
\MPscratchDim=\dimen109
\MPnumerator=\count103
\everyMPtoPDFconversion=\toks17
)
LaTeX Font Info:    External font `cmex10' loaded for size
(Font)              <12> on input line 11.
LaTeX Font Info:    External font `cmex10' loaded for size
(Font)              <8> on input line 11.
LaTeX Font Info:    External font `cmex10' loaded for size
(Font)              <6> on input line 11.
LaTeX Font Info:    Try loading font information for T1+aett on input line 12.
 (/usr/share/texmf-texlive/tex/latex/ae/t1aett.fd
File: t1aett.fd 1997/11/16 Font definitions for T1/aett.
)
<chemCal-001.pdf, id=5, 433.62pt x 433.62pt>
File: chemCal-001.pdf Graphic file (type pdf)
 <use chemCal-001.pdf> [1

{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
<chemCal-002.pdf, id=17, 433.62pt x 433.62pt>
File: chemCal-002.pdf Graphic file (type pdf)
 <use chemCal-002.pdf> [2 <./chemCal-001.pdf>]
LaTeX Font Info:    Try loading font information for TS1+aett on input line 86.

 (/usr/share/texmf/tex/latex/R/tex/latex/ts1aett.fd
File: ts1aett.fd 
)
LaTeX Font Info:    Try loading font information for TS1+cmtt on input line 86.


(/usr/share/texmf-texlive/tex/latex/base/ts1cmtt.fd
File: ts1cmtt.fd 1999/05/25 v2.5h Standard LaTeX font definitions
)
LaTeX Font Info:    Font shape `TS1/aett/m/n' in size <10> not available
(Font)              Font shape `TS1/cmtt/m/n' tried instead on input line 86.
 [3 <./chemCal-002.pdf>]

LaTeX Font Warning: Font shape `T1/aett/bx/n' undefined
(Font)              using `T1/aett/m/n' instead on input line 117.

LaTeX Font Info:    External font `cmex10' loaded for size
(Font)              <7> on input line 119.
LaTeX Font Info:    External font `cmex10' loaded for size
(Font)              <5> on input line 119.
[4] [5] (./chemCal.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 ) 
Here is how much of TeX's memory you used:
 5327 strings out of 495021
 77626 string characters out of 1181036
 141123 words of memory out of 3000000
 8405 multiletter control sequences out of 15000+50000
 21574 words of font info for 52 fonts, out of 3000000 for 9000
 28 hyphenation exceptions out of 8191
 38i,7n,21p,255b,444s stack positions out of 5000i,500n,10000p,200000b,50000s
 </home/ranke/.texmf-var/fonts/pk/ljfour/jknappen/ec/tctt1000.600pk></usr/sha
re/texmf-texlive/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texmf-te
xlive/fonts/type1/public/amsfonts/cm/cmex10.pfb></usr/share/texmf-texlive/fonts
/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/publ
ic/amsfonts/cm/cmmi5.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/
cm/cmmi7.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb
></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share
/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr17.pfb></usr/share/texmf-texli
ve/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texmf-texlive/fonts/type
1/public/amsfonts/cm/cmr7.pfb></usr/share/texmf-texlive/fonts/type1/public/amsf
onts/cm/cmsltt10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/c
msy10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt10.pfb><
/usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt12.pfb>
Output written on chemCal.pdf (5 pages, 179149 bytes).
PDF statistics:
 115 PDF objects out of 1000 (max. 8388607)
 12 named destinations out of 1000 (max. 500000)
 11 words of extra memory for PDF output out of 10000 (max. 10000000)