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- - - </head> +<![endif]--></head><body data-spy="scroll" data-target="#toc"> + - <body> <div class="container template-reference-topic"> - <header> - <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <header><div class="navbar navbar-default navbar-fixed-top" role="navigation"> <div class="container"> <div class="navbar-header"> <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false"> @@ -70,35 +18,21 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">drfit</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.7.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.7.4</span> </span> </div> <div id="navbar" class="navbar-collapse collapse"> - <ul class="nav navbar-nav"> - <li> - <a href="../index.html"> - <span class="fas fa fas fa-home fa-lg"></span> - - </a> -</li> -<li> + <ul class="nav navbar-nav"><li> <a href="../reference/index.html">Reference</a> </li> - </ul> - <ul class="nav navbar-nav navbar-right"> - - </ul> - - </div><!--/.nav-collapse --> + </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse --> </div><!--/.container --> </div><!--/.navbar --> - </header> - -<div class="row"> + </header><div class="row"> <div class="col-md-9 contents"> <div class="page-header"> <h1>Check raw data from a specified experiment or microtiter plate</h1> @@ -111,78 +45,74 @@ specified database, box plot controls, and plot the dose-response data.</p> </div> - <pre class="usage"><span class='fu'>checkplate</span>(<span class='no'>id</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"cytotox"</span>, <span class='st'>"enzymes"</span>)) - <span class='fu'>checkexperiment</span>(<span class='no'>id</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"ecotox"</span>, <span class='st'>"cytotox"</span>, <span class='st'>"enzymes"</span>), <span class='kw'>endpoint</span> <span class='kw'>=</span> <span class='st'>"%"</span>, - <span class='kw'>whereClause</span> <span class='kw'>=</span> <span class='st'>"1"</span>)</pre> - - <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2> - <table class="ref-arguments"> - <colgroup><col class="name" /><col class="desc" /></colgroup> - <tr> - <th>id</th> - <td><p>The id of the experiment or the plate identifying it within the database.</p></td> - </tr> - <tr> - <th>db</th> - <td><p>The database to be used. Currently, the microtiter plate databases - "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are - supported, as well as the database of ecotoxicity experiments "ecotox".</p></td> - </tr> - <tr> - <th>endpoint</th> - <td><p>The endpoint that should be used for selecting the data. Only important if - the database "ecotox" is used. Defaults to "%".</p></td> - </tr> - <tr> - <th>whereClause</th> - <td><p>With this argument, additional conditions for the SQL query can be set, - e.g. "duration = 48" (i.e. "Only retrieve data with duration 48"). The - default is 1 (in SQL syntax this means TRUE).</p></td> - </tr> - </table> + <div id="ref-usage"> + <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">checkplate</span><span class="op">(</span><span class="va">id</span>, db <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"cytotox"</span>, <span class="st">"enzymes"</span><span class="op">)</span><span class="op">)</span></span> +<span> <span class="fu">checkexperiment</span><span class="op">(</span><span class="va">id</span>, db <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"ecotox"</span>, <span class="st">"cytotox"</span>, <span class="st">"enzymes"</span><span class="op">)</span>, endpoint <span class="op">=</span> <span class="st">"%"</span>, </span> +<span> whereClause <span class="op">=</span> <span class="st">"1"</span><span class="op">)</span></span></code></pre></div> + </div> - <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2> + <div id="arguments"> + <h2>Arguments</h2> + <dl><dt>id</dt> +<dd><p>The id of the experiment or the plate identifying it within the database.</p></dd> - <p>The function lists a report and shows two graphs.</p> + <dt>db</dt> +<dd><p>The database to be used. Currently, the microtiter plate databases + "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are + supported, as well as the database of ecotoxicity experiments "ecotox".</p></dd> - <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> - <pre class="examples"><div class='input'><span class='co'># Check plate number 3 in the cytotox database</span> -<span class='kw'>if</span> (<span class='fl'>FALSE</span>) <span class='fu'>checkplate</span>(<span class='fl'>3</span>) + <dt>endpoint</dt> +<dd><p>The endpoint that should be used for selecting the data. Only important if + the database "ecotox" is used. Defaults to "%".</p></dd> -<span class='co'># Check data from experiment 1517 with duration 48 hours</span> -<span class='kw'>if</span> (<span class='fl'>FALSE</span>) <span class='fu'>checkexperiment</span>(<span class='fl'>1517</span>, <span class='kw'>whereClause</span> <span class='kw'>=</span> <span class='st'>"duration = 48"</span>)</div></pre> - </div> - <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> - <h2>Contents</h2> - <ul class="nav nav-pills nav-stacked"> - <li><a href="#arguments">Arguments</a></li> - <li><a href="#value">Value</a></li> - <li><a href="#examples">Examples</a></li> - </ul> + <dt>whereClause</dt> +<dd><p>With this argument, additional conditions for the SQL query can be set, + e.g. "duration = 48" (i.e. "Only retrieve data with duration 48"). The + default is 1 (in SQL syntax this means TRUE).</p></dd> +</dl></div> + <div id="value"> + <h2>Value</h2> + + +<p>The function lists a report and shows two graphs.</p> + </div> + <div id="author"> <h2>Author</h2> <p>Johannes Ranke - <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a></p> + <a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a></p> + </div> + + <div id="ref-examples"> + <h2>Examples</h2> + <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># Check plate number 3 in the cytotox database</span></span></span> +<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="fu">checkplate</span><span class="op">(</span><span class="fl">3</span><span class="op">)</span></span></span> +<span class="r-in"><span></span></span> +<span class="r-in"><span><span class="co"># Check data from experiment 1517 with duration 48 hours</span></span></span> +<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="fu">checkexperiment</span><span class="op">(</span><span class="fl">1517</span>, whereClause <span class="op">=</span> <span class="st">"duration = 48"</span><span class="op">)</span></span></span> +</code></pre></div> + </div> </div> + <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> + <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2> + </nav></div> </div> - <footer> - <div class="copyright"> - <p>Developed by Johannes Ranke.</p> + <footer><div class="copyright"> + <p></p><p>Developed by Johannes Ranke.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p> + <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> </div> - </footer> - </div> + </footer></div> - </body> -</html> + + </body></html> |