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<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Check raw data from range of plates or experiments — checkcontrols • drfit</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Check raw data from range of plates or experiments — checkcontrols"><meta property="og:description" content="Report control data from a specified range of microtiter plates or
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<h1>Check raw data from range of plates or experiments</h1>
<div class="hidden name"><code>checkcontrols.Rd</code></div>
</div>
<div class="ref-description">
<p>Report control data from a specified range of microtiter plates or
experiments from a specified database.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">checkcontrols</span><span class="op">(</span>last <span class="op">=</span> <span class="fl">10</span>, id <span class="op">=</span> <span class="cn">NULL</span>, </span>
<span> db <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"cytotox"</span>, <span class="st">"enzymes"</span>, <span class="st">"ecotox"</span><span class="op">)</span>,</span>
<span> celltype <span class="op">=</span> <span class="st">"IPC-81"</span>, enzymetype <span class="op">=</span> <span class="st">"AChE"</span>, </span>
<span> organism <span class="op">=</span> <span class="st">"Vibrio fischeri"</span>,</span>
<span> endpoint <span class="op">=</span> <span class="st">"%"</span>, qcc <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"R"</span>, <span class="st">"xbar"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>last</dt>
<dd><p>If <code>id</code> is not specified, this argument specifies the number of
plates/experiments that should be evaluated. The plates/experiments with
the hightest numbers are selected.</p></dd>
<dt>id</dt>
<dd><p>A numeric vector of integers, specifying the plates or experiments explicitly.</p></dd>
<dt>db</dt>
<dd><p>The database to be used. Currently, the microtiter plate databases
"cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are
supported, as well as the database of ecotoxicity experiments "ecotox".</p></dd>
<dt>celltype</dt>
<dd><p>Only important if database "cytotox" is used. Data for
"IPC-81", "C6", "NB4", "HeLa", "Jurkat" and "U937" are available.</p></dd>
<dt>enzymetype</dt>
<dd><p>Only important if database "enzymes" is used.
Data for "AChE", "GR" and "GST" are available.</p></dd>
<dt>organism</dt>
<dd><p>Only important if database "ecotox" is used.</p></dd>
<dt>endpoint</dt>
<dd><p>The endpoint that should be used for selecting the data. Only important if
the database "ecotox" is used. Defaults to "%".</p></dd>
<dt>qcc</dt>
<dd><p>The type of quality control charts to be plotted. By default, an R chart
(showing ranges of control values within plates/experiments), and an
xbar chart (showing means) are generated.</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>The function lists a report and shows two graphs.</p>
</div>
<div id="author">
<h2>Author</h2>
<p>Johannes Ranke
<a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a></p>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="fu">checkcontrols</span><span class="op">(</span><span class="fl">15</span><span class="op">)</span></span></span>
</code></pre></div>
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