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authorJohannes Ranke <jranke@uni-bremen.de>2021-01-06 20:34:52 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2021-01-06 20:38:29 +0100
commitf99bdd8697c3bfbd432a320774a4692fd0e1241a (patch)
treef2f03f30d3fa3f25780f21611ec407b7a90ad2eb /NEWS.md
parentd28ce9f8ad6f9573e403ebd8eb637ecd5e5b0e02 (diff)
Make saemix and corresponding tests optional
Address release critical check and test issues
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# mkin 0.9.50.4 (unreleased)
-- 'mixed.mmkin' New container for mmkin objects for plotting with the 'plot.mixed.mmkin' method
+## General new features
- 'mkinmod' models gain arguments 'name' and 'dll_dir' which, in conjunction with a current version of the 'inline' package, make it possible to still use the DLL used for fast ODE solutions with 'deSolve' after saving and restoring the 'mkinmod' object.
-- 'f_norm_temp_focus' generic function to normalise time intervals using the FOCUS method, with methods for numeric vectors and 'mkindsg' objects
-
- 'mkindsg' R6 class for groups of 'mkinds' datasets with metadata
-- 'D24_2014' dataset
+- 'f_norm_temp_focus' generic function to normalise time intervals using the FOCUS method, with methods for numeric vectors and 'mkindsg' objects
+
+- 'D24_2014' and 'dimethenamid_2018' datasets
- 'focus_soil_moisture' FOCUS default soil moisture data
-- 'plot.mixed.mmkin' method used for 'nlme.mmkin' and 'saem.mmkin', both inheriting from 'mixed.mmkin' (currently virtual)
-
-- 'saem' generic function to fit saemix models, with a generator 'saem.mmkin', summary and plot methods
+- 'update' method for 'mmkin' objects
- 'transform_odeparms', 'backtransform_odeparms': Use logit transformation for solitary fractions like the g parameter of the DFOP model, or formation fractions for a pathway to only one target variable
-- 'update' method for 'mmkin' objects
+## Mixed-effects models
+
+- 'mixed.mmkin' New container for mmkin objects for plotting with the 'plot.mixed.mmkin' method
+
+- 'plot.mixed.mmkin' method used for 'nlme.mmkin' and 'saem.mmkin', both inheriting from 'mixed.mmkin' (currently virtual)
- 'plot', 'summary' and 'print' methods for 'nlme.mmkin' objects
-- 'saemix_model', 'saemix_data': Helper functions to fit nonlinear mixed-effects models for mmkin row objects using the saemix package
+- Add the current development version of the saemix package as a second, optional backend for mixed-effects models
+
+- DESCRIPTION: Additional_repositories entry pointing to my drat repository on github for a suitable saemix version
+
+- 'saemix_model', 'saemix_data': Helper functions to fit nonlinear mixed-effects models for mmkin row objects.
+
+- 'saem' generic function to fit saemix models using 'saemix_model' and 'saemix_data', with a generator 'saem.mmkin', summary and plot methods
# mkin 0.9.50.3 (2020-10-08)

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