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authorJohannes Ranke <jranke@uni-bremen.de>2020-11-19 15:41:24 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2020-11-19 15:41:24 +0100
commitdb9ae6a0c9cecb92048fde6f06af1da183c09b5f (patch)
treef0ea97545549c71bd7aa3d13afed422fd402f0e6 /docs/dev/reference/D24_2014.html
parent6441a9f35d66f2c4d38c0036f99cd8f509d76f3b (diff)
Depend on parallel, doc improvements
By depending on parallel instead of importing it, functions to set up and stop a cluster are always available when mkin is loaded. The use of multicore processing in mmkin on Windows is now documented in the help file, which brings mkin closer to a version 1.0 #9.
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+<meta property="og:description" content="The five datasets were extracted from the active substance evaluation dossier
+published by EFSA. Kinetic evaluations shown for these datasets are intended
+to illustrate and advance kinetic modelling. The fact that these data and
+some results are shown here does not imply a license to use them in the
+context of pesticide registrations, as the use of the data may be
+constrained by data protection regulations." />
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+ <div class="page-header">
+ <h1>Aerobic soil degradation data on 2,4-D from the EU assessment in 2014</h1>
+ <small class="dont-index">Source: <a href='https://github.com/jranke/mkin/blob/master/R/D24_2014.R'><code>R/D24_2014.R</code></a></small>
+ <div class="hidden name"><code>D24_2014.Rd</code></div>
+ </div>
+
+ <div class="ref-description">
+ <p>The five datasets were extracted from the active substance evaluation dossier
+published by EFSA. Kinetic evaluations shown for these datasets are intended
+to illustrate and advance kinetic modelling. The fact that these data and
+some results are shown here does not imply a license to use them in the
+context of pesticide registrations, as the use of the data may be
+constrained by data protection regulations.</p>
+ </div>
+
+ <pre class="usage"><span class='va'>D24_2014</span></pre>
+
+
+ <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
+
+ <p>An <a href='mkindsg.html'>mkindsg</a> object grouping five datasets</p>
+ <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
+
+ <p>Hellenic Ministry of Rural Development and Agriculture (2014)
+Final addendum to the Renewal Assessment Report - public version - 2,4-D
+Volume 3 Annex B.8 Fate and behaviour in the environment
+<a href='http://registerofquestions.efsa.europa.eu/roqFrontend/outputLoader?output=ON-3812'>http://registerofquestions.efsa.europa.eu/roqFrontend/outputLoader?output=ON-3812</a></p>
+ <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>
+
+ <p>Data for the first dataset are from p. 685. Data for the other four
+datasets were used in the preprocessed versions given in the kinetics
+section (p. 761ff.), with the exception of residues smaller than 1 for DCP
+in the soil from Site I2, where the values given on p. 694 were used.</p>
+<p>The R code used to create this data object is installed with this package
+in the 'dataset_generation' directory. In the code, page numbers are given for
+specific pieces of information in the comments.</p>
+
+ <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
+ <pre class="examples"><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>D24_2014</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; &lt;mkindsg&gt; holding 5 mkinds objects
+#&gt; Title $title: Aerobic soil degradation data on 2,4-D from the EU assessment in 2014
+#&gt; Occurrene of observed compounds $observed_n:
+#&gt; D24 DCP DCA
+#&gt; 5 4 4
+#&gt; Meta information $meta:
+#&gt; study usda_soil_type study_moisture_ref_type rel_moisture
+#&gt; 1 Cohen 1991 Silt loam &lt;NA&gt; NA
+#&gt; 2 Liu and Adelfinskaya 2011 Silt loam pF1 0.5
+#&gt; 3 Liu and Adelfinskaya 2011 Loam pF1 0.5
+#&gt; 4 Liu and Adelfinskaya 2011 Loam pF1 0.5
+#&gt; 5 Liu and Adelfinskaya 2011 Loamy sand pF1 0.5
+#&gt; temperature
+#&gt; 1 25
+#&gt; 2 20
+#&gt; 3 20
+#&gt; 4 20
+#&gt; 5 20</div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>D24_2014</span><span class='op'>$</span><span class='va'>ds</span><span class='op'>[[</span><span class='fl'>1</span><span class='op'>]</span><span class='op'>]</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; &lt;mkinds&gt; with $title: Mississippi
+#&gt; Observed compounds $observed: D24
+#&gt; Sampling times $sampling_times:
+#&gt; 0, 2, 4, 7, 15, 24, 35, 56, 71, 114, 183, 273, 365
+#&gt; With a maximum of 1 replicates
+#&gt; time D24
+#&gt; 1 0 96.8
+#&gt; 2 2 81.0
+#&gt; 3 4 81.7
+#&gt; 4 7 88.2
+#&gt; 5 15 66.3
+#&gt; 6 24 72.9
+#&gt; 7 35 62.6
+#&gt; 8 56 54.6
+#&gt; 9 71 35.2
+#&gt; 10 114 18.0
+#&gt; 11 183 11.3
+#&gt; 12 273 9.9
+#&gt; 13 365 6.3</div><div class='input'><span class='va'>m_D24</span> <span class='op'>=</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span><span class='op'>(</span>D24 <span class='op'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, to <span class='op'>=</span> <span class='st'>"DCP"</span><span class='op'>)</span>,
+ DCP <span class='op'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, to <span class='op'>=</span> <span class='st'>"DCA"</span><span class='op'>)</span>,
+ DCA <span class='op'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span><span class='op'>)</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div></pre>
+ </div>
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