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authorJohannes Ranke <jranke@uni-bremen.de>2021-01-11 12:59:50 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2021-01-11 12:59:50 +0100
commit4e37669ac2ad3b3138480c3209f414101469fac7 (patch)
tree94172cadfcc05339673d56fdc467c33e696eab1f /docs/dev/reference/mkinfit.html
parentf99bdd8697c3bfbd432a320774a4692fd0e1241a (diff)
Rebuild docs
Diffstat (limited to 'docs/dev/reference/mkinfit.html')
-rw-r--r--docs/dev/reference/mkinfit.html23
1 files changed, 12 insertions, 11 deletions
diff --git a/docs/dev/reference/mkinfit.html b/docs/dev/reference/mkinfit.html
index 73c09c1f..6ae7b343 100644
--- a/docs/dev/reference/mkinfit.html
+++ b/docs/dev/reference/mkinfit.html
@@ -129,7 +129,7 @@ likelihood function." />
<ul class="nav navbar-nav navbar-right">
<li>
<a href="https://github.com/jranke/mkin/">
- <span class="fab fa fab fa-github fa-lg"></span>
+ <span class="fab fa-github fa-lg"></span>
</a>
</li>
@@ -413,7 +413,8 @@ internal rate transformation.</p>
for measurement error in analytical chemistry. <em>Technometrics</em> 37(2), 176-184.</p>
<p>Ranke J and Meinecke S (2019) Error Models for the Kinetic Evaluation of Chemical
Degradation Data. <em>Environments</em> 6(12) 124
-<a href='https://doi.org/10.3390/environments6120124'>doi:10.3390/environments6120124</a>.</p>
+doi: <a href='https://doi.org/10.3390/environments6120124'>10.3390/environments6120124</a>
+.</p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p><a href='summary.mkinfit.html'>summary.mkinfit</a>, <a href='plot.mkinfit.html'>plot.mkinfit</a>, <a href='parms.html'>parms</a> and <a href='https://rdrr.io/pkg/lmtest/man/lrtest.html'>lrtest</a>.</p>
@@ -432,8 +433,8 @@ Degradation Data. <em>Environments</em> 6(12) 124
<span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span><span class='op'>(</span><span class='va'>fit</span><span class='op'>)</span>
</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.4
#&gt; R version used for fitting: 4.0.3
-#&gt; Date of fit: Mon Nov 30 15:48:34 2020
-#&gt; Date of summary: Mon Nov 30 15:48:34 2020
+#&gt; Date of fit: Mon Jan 11 12:41:45 2021
+#&gt; Date of summary: Mon Jan 11 12:41:45 2021
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -573,10 +574,10 @@ Degradation Data. <em>Environments</em> 6(12) 124
analytical <span class='op'>=</span> <span class='fu'>mkinfit</span><span class='op'>(</span><span class='va'>SFO_SFO</span>, <span class='va'>FOCUS_D</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span>,
solution_type <span class='op'>=</span> <span class='st'>"analytical"</span><span class='op'>)</span><span class='op'>)</span>
<span class='op'>}</span>
-</div><div class='output co'>#&gt; test relative elapsed
-#&gt; 3 analytical 1.000 0.532
-#&gt; 1 deSolve_compiled 1.831 0.974
-#&gt; 2 eigen 2.235 1.189</div><div class='input'><span class='co'># }</span>
+</div><div class='output co'>#&gt; <span class='message'>Loading required package: rbenchmark</span></div><div class='output co'>#&gt; test relative elapsed
+#&gt; 3 analytical 1.000 0.526
+#&gt; 1 deSolve_compiled 1.903 1.001
+#&gt; 2 eigen 2.308 1.214</div><div class='input'><span class='co'># }</span>
<span class='co'># Use stepwise fitting, using optimised parameters from parent only fit, FOMC-SFO</span>
<span class='co'># \dontrun{</span>
@@ -600,8 +601,8 @@ Degradation Data. <em>Environments</em> 6(12) 124
<span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span><span class='op'>(</span><span class='va'>fit.FOMC_SFO.tc</span>, data <span class='op'>=</span> <span class='cn'>FALSE</span><span class='op'>)</span>
</div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs produced</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs produced</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs produced</span></div><div class='output co'>#&gt; <span class='warning'>Warning: diag(.) had 0 or NA entries; non-finite result is doubtful</span></div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.4
#&gt; R version used for fitting: 4.0.3
-#&gt; Date of fit: Mon Nov 30 15:48:45 2020
-#&gt; Date of summary: Mon Nov 30 15:48:45 2020
+#&gt; Date of fit: Mon Jan 11 12:41:56 2021
+#&gt; Date of summary: Mon Jan 11 12:41:56 2021
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -610,7 +611,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted using 4273 model solutions performed in 3.191 s
+#&gt; Fitted using 4273 model solutions performed in 3.456 s
#&gt;
#&gt; Error model: Two-component variance function
#&gt;

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