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authorJohannes Ranke <jranke@uni-bremen.de>2023-04-16 13:42:23 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2023-04-16 13:42:23 +0200
commit34ec60f1b140d788880d84b70cb62b344f7d74b9 (patch)
tree26196c367f037b69f410363a393dad87b5bff233 /docs/dev/reference/nlme.html
parent99b4554a1ce657295b1358509110f3d02155a913 (diff)
Complete rebuild of static docs
Diffstat (limited to 'docs/dev/reference/nlme.html')
-rw-r--r--docs/dev/reference/nlme.html43
1 files changed, 30 insertions, 13 deletions
diff --git a/docs/dev/reference/nlme.html b/docs/dev/reference/nlme.html
index b8b36d56..81c45ab9 100644
--- a/docs/dev/reference/nlme.html
+++ b/docs/dev/reference/nlme.html
@@ -20,13 +20,13 @@ datasets. They are used internally by the nlme.mmkin() method."><meta name="robo
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.3</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav"><li>
- <a href="../reference/index.html">Functions and data</a>
+ <a href="../reference/index.html">Reference</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
@@ -37,6 +37,8 @@ datasets. They are used internally by the nlme.mmkin() method."><meta name="robo
<ul class="dropdown-menu" role="menu"><li>
<a href="../articles/mkin.html">Introduction to mkin</a>
</li>
+ <li class="divider">
+ <li class="dropdown-header">Example evaluations with (generalised) nonlinear least squares</li>
<li>
<a href="../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
</li>
@@ -44,22 +46,29 @@ datasets. They are used internally by the nlme.mmkin() method."><meta name="robo
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
- <a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
</li>
+ <li class="divider">
+ <li class="dropdown-header">Example evaluations with hierarchical models (nonlinear mixed-effects models)</li>
<li>
- <a href="../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ <a href="../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
+ <a href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ <a href="../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
- <a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ <a href="../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a>
</li>
<li>
- <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ <a href="../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ </li>
+ <li class="divider">
+ <li class="dropdown-header">Performance</li>
+ <li>
+ <a href="../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
<a href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
@@ -67,6 +76,14 @@ datasets. They are used internally by the nlme.mmkin() method."><meta name="robo
<li>
<a href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
</li>
+ <li class="divider">
+ <li class="dropdown-header">Miscellaneous</li>
+ <li>
+ <a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ </li>
+ <li>
+ <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul></li>
<li>
<a href="../news/index.html">News</a>
@@ -173,12 +190,12 @@ datasets. They are used internally by the <code><a href="nlme.mmkin.html">nlme.m
<span class="r-out co"><span class="r-pr">#&gt;</span> Formula: list(parent_0 ~ 1, log_k_parent_sink ~ 1)</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Level: ds</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Structure: Diagonal</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 log_k_parent_sink Residual</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> StdDev: 0.000368491 0.7058039 3.065183</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 log_k_parent_sink Residual</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> StdDev: 0.0004253489 0.7058039 3.065183</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Fixed effects: parent_0 + log_k_parent_sink ~ 1 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Value Std.Error DF t-value p-value</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 101.18323 0.7900461 43 128.07257 0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 101.18323 0.7900461 43 128.07256 0</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> log_k_parent_sink -3.08708 0.4171755 43 -7.39995 0</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Correlation: </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> prnt_0</span>
@@ -186,7 +203,7 @@ datasets. They are used internally by the <code><a href="nlme.mmkin.html">nlme.m
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Standardized Within-Group Residuals:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Min Q1 Med Q3 Max </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> -2.38427070 -0.52059848 0.03593021 0.39987268 2.73188969 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> -2.38427071 -0.52059848 0.03593021 0.39987268 2.73188969 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Number of Observations: 47</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Number of Groups: 3 </span>
@@ -213,7 +230,7 @@ datasets. They are used internally by the <code><a href="nlme.mmkin.html">nlme.m
</div>
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- <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
+ <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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