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authorJohannes Ranke <jranke@uni-bremen.de>2020-11-10 05:14:57 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2020-11-10 05:14:57 +0100
commit606ef9ad6cae0ddfae6db6b90deb03f81140e46f (patch)
tree5a0a581a2251621efdcbd5a5c425cb04eca306f5 /docs/dev/reference/nlme.mmkin.html
parent96500fa127b59bddb2fcfe77b7b97415bd105f4a (diff)
Digits for summary methods, print.saem.mmkin
Diffstat (limited to 'docs/dev/reference/nlme.mmkin.html')
-rw-r--r--docs/dev/reference/nlme.mmkin.html35
1 files changed, 19 insertions, 16 deletions
diff --git a/docs/dev/reference/nlme.mmkin.html b/docs/dev/reference/nlme.mmkin.html
index defef75d..05edbde5 100644
--- a/docs/dev/reference/nlme.mmkin.html
+++ b/docs/dev/reference/nlme.mmkin.html
@@ -170,7 +170,7 @@ have been obtained by fitting the same model to a list of datasets.</p>
<span class='op'>)</span>
<span class='co'># S3 method for nlme.mmkin</span>
-<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>x</span>, <span class='va'>...</span><span class='op'>)</span>
+<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>x</span>, digits <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/Extremes.html'>max</a></span><span class='op'>(</span><span class='fl'>3</span>, <span class='fu'><a href='https://rdrr.io/r/base/options.html'>getOption</a></span><span class='op'>(</span><span class='st'>"digits"</span><span class='op'>)</span> <span class='op'>-</span> <span class='fl'>3</span><span class='op'>)</span>, <span class='va'>...</span><span class='op'>)</span>
<span class='co'># S3 method for nlme.mmkin</span>
<span class='fu'><a href='https://rdrr.io/r/stats/update.html'>update</a></span><span class='op'>(</span><span class='va'>object</span>, <span class='va'>...</span><span class='op'>)</span></pre>
@@ -242,6 +242,10 @@ parameters taken from the mmkin object are used</p></td>
<td><p>An nlme.mmkin object to print</p></td>
</tr>
<tr>
+ <th>digits</th>
+ <td><p>Number of digits to use for printing</p></td>
+ </tr>
+ <tr>
<th>...</th>
<td><p>Update specifications passed to update.nlme</p></td>
</tr>
@@ -262,8 +266,7 @@ methods that will automatically work on 'nlme.mmkin' objects, such as
<code><a href='https://rdrr.io/pkg/nlme/man/intervals.html'>nlme::intervals()</a></code>, <code><a href='https://rdrr.io/pkg/nlme/man/anova.lme.html'>nlme::anova.lme()</a></code> and <code><a href='https://rdrr.io/pkg/nlme/man/coef.lme.html'>nlme::coef.lme()</a></code>.</p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
- <div class='dont-index'><p><code><a href='nlme_function.html'>nlme_function()</a></code>, <a href='plot.mixed.mmkin.html'>plot.mixed.mmkin</a>, <a href='summary.nlme.mmkin.html'>summary.nlme.mmkin</a>,
-parms.nlme.mmkin</p></div>
+ <div class='dont-index'><p><code><a href='nlme_function.html'>nlme_function()</a></code>, <a href='plot.mixed.mmkin.html'>plot.mixed.mmkin</a>, <a href='summary.nlme.mmkin.html'>summary.nlme.mmkin</a></p></div>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'><span class='va'>ds</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/lapply.html'>lapply</a></span><span class='op'>(</span><span class='va'>experimental_data_for_UBA_2019</span><span class='op'>[</span><span class='fl'>6</span><span class='op'>:</span><span class='fl'>10</span><span class='op'>]</span>,
@@ -290,15 +293,15 @@ parms.nlme.mmkin</p></div>
#&gt;
#&gt; Fixed effects:
#&gt; list(parent_0 ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
-#&gt; parent_0 log_k1 log_k2 g_qlogis
-#&gt; 94.17015185 -1.80015278 -4.14738834 0.03239833
+#&gt; parent_0 log_k1 log_k2 g_qlogis
+#&gt; 94.1702 -1.8002 -4.1474 0.0324
#&gt;
#&gt; Random effects:
#&gt; Formula: list(parent_0 ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
#&gt; Level: ds
#&gt; Structure: Diagonal
-#&gt; parent_0 log_k1 log_k2 g_qlogis Residual
-#&gt; StdDev: 2.488249 0.8447275 1.32965 0.4651789 2.321364
+#&gt; parent_0 log_k1 log_k2 g_qlogis Residual
+#&gt; StdDev: 2.488 0.8447 1.33 0.4652 2.321
#&gt; </div><div class='input'><span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='va'>f_nlme_dfop</span><span class='op'>)</span>
</div><div class='img'><img src='nlme.mmkin-1.png' alt='' width='700' height='433' /></div><div class='input'><span class='fu'><a href='endpoints.html'>endpoints</a></span><span class='op'>(</span><span class='va'>f_nlme_dfop</span><span class='op'>)</span>
</div><div class='output co'>#&gt; $distimes
@@ -321,12 +324,12 @@ parms.nlme.mmkin</p></div>
#&gt; Fixed effects:
#&gt; list(parent_0 ~ 1, log_k_parent ~ 1)
#&gt; parent_0 log_k_parent
-#&gt; 75.933480 -3.555983
+#&gt; 75.933 -3.556
#&gt;
#&gt; Random effects:
#&gt; Formula: parent_0 ~ 1 | ds
-#&gt; parent_0 Residual
-#&gt; StdDev: 0.002416792 21.63027
+#&gt; parent_0 Residual
+#&gt; StdDev: 0.002417 21.63
#&gt; </div><div class='input'> <span class='va'>ds_2</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/lapply.html'>lapply</a></span><span class='op'>(</span><span class='va'>experimental_data_for_UBA_2019</span><span class='op'>[</span><span class='fl'>6</span><span class='op'>:</span><span class='fl'>10</span><span class='op'>]</span>,
<span class='kw'>function</span><span class='op'>(</span><span class='va'>x</span><span class='op'>)</span> <span class='va'>x</span><span class='op'>$</span><span class='va'>data</span><span class='op'>[</span><span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"name"</span>, <span class='st'>"time"</span>, <span class='st'>"value"</span><span class='op'>)</span><span class='op'>]</span><span class='op'>)</span>
<span class='va'>m_sfo_sfo</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span><span class='op'>(</span>parent <span class='op'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"A1"</span><span class='op'>)</span>,
@@ -427,15 +430,15 @@ parms.nlme.mmkin</p></div>
#&gt;
#&gt; Fixed effects:
#&gt; list(parent_0 ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
-#&gt; parent_0 log_k1 log_k2 g_qlogis
-#&gt; 94.04774566 -1.82339808 -4.16715311 0.05685186
+#&gt; parent_0 log_k1 log_k2 g_qlogis
+#&gt; 94.04775 -1.82340 -4.16715 0.05685
#&gt;
#&gt; Random effects:
#&gt; Formula: list(parent_0 ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
#&gt; Level: ds
#&gt; Structure: Diagonal
-#&gt; parent_0 log_k1 log_k2 g_qlogis Residual
-#&gt; StdDev: 2.473881 0.8499884 1.337185 0.4659005 1
+#&gt; parent_0 log_k1 log_k2 g_qlogis Residual
+#&gt; StdDev: 2.474 0.85 1.337 0.4659 1
#&gt;
#&gt; Variance function:
#&gt; Structure: Constant plus proportion of variance covariate
@@ -462,14 +465,14 @@ parms.nlme.mmkin</p></div>
#&gt; Fixed effects:
#&gt; list(parent_0 ~ 1, log_k_parent_sink ~ 1, log_k_parent_A1 ~ 1, log_k_A1_sink ~ 1)
#&gt; parent_0 log_k_parent_sink log_k_parent_A1 log_k_A1_sink
-#&gt; 87.975536 -3.669816 -4.164127 -4.645073
+#&gt; 87.976 -3.670 -4.164 -4.645
#&gt;
#&gt; Random effects:
#&gt; Formula: list(parent_0 ~ 1, log_k_parent_sink ~ 1, log_k_parent_A1 ~ 1, log_k_A1_sink ~ 1)
#&gt; Level: ds
#&gt; Structure: Diagonal
#&gt; parent_0 log_k_parent_sink log_k_parent_A1 log_k_A1_sink Residual
-#&gt; StdDev: 3.992214 1.77702 1.054733 0.4821383 6.482585
+#&gt; StdDev: 3.992 1.777 1.055 0.4821 6.483
#&gt;
#&gt; Variance function:
#&gt; Structure: Different standard deviations per stratum

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