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| author | Johannes Ranke <jranke@uni-bremen.de> | 2015-11-09 09:05:15 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2015-11-09 09:05:15 +0100 |
| commit | 3151647526f299686b68420a83ae38cd7f3d08f5 (patch) | |
| tree | c061b5a23ac6cc5644c6851012105b185715ef5e /inst/web/IORE.solution.html | |
| parent | 415ca2bea5d5c3815bd9f8fa1566cec5bb3fc775 (diff) | |
Rebuild vignettes and static documentation
Diffstat (limited to 'inst/web/IORE.solution.html')
| -rw-r--r-- | inst/web/IORE.solution.html | 149 |
1 files changed, 149 insertions, 0 deletions
diff --git a/inst/web/IORE.solution.html b/inst/web/IORE.solution.html new file mode 100644 index 00000000..d90724eb --- /dev/null +++ b/inst/web/IORE.solution.html @@ -0,0 +1,149 @@ +<!DOCTYPE html> +<html lang="en"> + <head> + <meta charset="utf-8"> +<title>IORE.solution. mkin 0.9-41</title> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> +<meta name="author" content=""> + +<link href="css/bootstrap.css" rel="stylesheet"> +<link href="css/bootstrap-responsive.css" rel="stylesheet"> +<link href="css/highlight.css" rel="stylesheet"> +<link href="css/staticdocs.css" rel="stylesheet"> + +<!--[if lt IE 9]> + <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> +<![endif]--> + +<script type="text/x-mathjax-config"> + MathJax.Hub.Config({ + tex2jax: { + inlineMath: [ ['$','$'], ["\\(","\\)"] ], + processEscapes: true + } + }); +</script> +<script type="text/javascript" + src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> +</script> + </head> + + <body> + <div class="navbar"> + <div class="navbar-inner"> + <div class="container"> + <a class="brand" href="#">mkin 0.9-41</a> + <div class="nav"> + <ul class="nav"> + <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> + </ul> + </div> + </div> + </div> +</div> + + <div class="container"> + <header> + + </header> + + <h1> Indeterminate order rate equation kinetics </h1> + +<div class="row"> + <div class="span8"> + <h2>Usage</h2> + <pre><div>IORE.solution(t, parent.0, k__iore, N)</div></pre> + + <h2>Arguments</h2> + <dl> + <dt>t</dt> + <dd> Time. </dd> + <dt>parent.0</dt> + <dd> Starting value for the response variable at time zero. </dd> + <dt>k__iore</dt> + <dd> Rate constant. Note that this depends on the concentration units used. </dd> + <dt>N</dt> + <dd> Exponent describing the nonlinearity of the rate equation </dd> + </dl> + + <div class="Description"> + <h2>Description</h2> + + <p>Function describing exponential decline from a defined starting value, with + a concentration dependent rate constant.</p> + + </div> + + <div class="Note"> + <h2>Note</h2> + + <p>The solution of the IORE kinetic model reduces to the + <code><a href='SFO.solution.html'>SFO.solution</a></code> if N = 1. + The parameters of the IORE model can be transformed to equivalent parameters + of the FOMC mode - see the NAFTA guidance for details.</p> + + </div> + + <div class="Value"> + <h2>Value</h2> + + <p><dl> + The value of the response variable at time <code>t</code>. +</dl></p> + + </div> + + <div class="References"> + <h2>References</h2> + + <p>NAFTA Technical Working Group on Pesticides (not dated) Guidance for + Evaluating and Calculating Degradation Kinetics in Environmental + Media</p> + + </div> + + <h2 id="examples">Examples</h2> + <pre class="examples"><div class='input'> plot(function(x) IORE.solution(x, 100, 0.2, 1.3), 0, 2, + ylim = c(0, 100)) +</div> +<p><img src='IORE.solution-2.png' alt='' width='540' height='400' /></p> +<div class='input'> fit.fomc <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) + fit.iore <- mkinfit("IORE", FOCUS_2006_C, quiet = TRUE) + fit.iore.deS <- mkinfit("IORE", FOCUS_2006_C, solution_type = "deSolve", quiet = TRUE) + + print(data.frame(coef(fit.fomc), coef(fit.iore), coef(fit.iore.deS), + row.names = paste("model par", 1:3))) +</div> +<div class='output'> coef.fit.fomc. coef.fit.iore. coef.fit.iore.deS. +model par 1 85.87489063 85.874891 85.874890 +model par 2 0.05192238 -4.826631 -4.826631 +model par 3 0.65096665 1.949403 1.949403 +</div> +<div class='input'> print(rbind(fomc = endpoints(fit.fomc)$distimes, iore = endpoints(fit.iore)$distimes, + iore.deS = endpoints(fit.iore)$distimes)) +</div> +<div class='output'> DT50 DT90 DT50back +fomc 1.785233 15.1479 4.559973 +iore 1.785233 15.1479 4.559973 +iore.deS 1.785233 15.1479 4.559973 +</div></pre> + </div> + <div class="span4"> + <!-- <ul> + <li>IORE.solution</li> + </ul> + <ul> + <li> manip </li> + </ul> --> + + + </div> +</div> + + <footer> + <p class="pull-right"><a href="#">Back to top</a></p> +<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> + </footer> + </div> + </body> +</html>
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