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authorJohannes Ranke <jranke@uni-bremen.de>2016-10-06 08:56:45 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2016-10-06 08:56:45 +0200
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-<!DOCTYPE html>
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-<title>mkinresplot. mkin 0.9.44.9000</title>
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- Johannes Ranke
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- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
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- <div class="container">
- <header>
-
- </header>
-
- <h1>
- Function to plot residuals stored in an mkin object
-</h1>
-
-<div class="row">
- <div class="span8">
- <h2>Usage</h2>
- <pre><div>mkinresplot(object, obs_vars&nbsp;=&nbsp;names(object$mkinmod$map), xlim&nbsp;=&nbsp;c(0, 1.1 * max(object$data$time)), xlab&nbsp;=&nbsp;"Time", ylab&nbsp;=&nbsp;"Residual", maxabs&nbsp;=&nbsp;"auto", legend&nbsp;=&nbsp;TRUE, lpos&nbsp;=&nbsp;"topright", ...)</div></pre>
-
- <h2>Arguments</h2>
- <dl>
- <dt>object</dt>
- <dd>
- A fit represented in an <code><a href='mkinfit.html'>mkinfit</a></code> object.
-</dd>
- <dt>obs_vars</dt>
- <dd>
- A character vector of names of the observed variables for which residuals
- should be plotted. Defaults to all observed variables in the model
-</dd>
- <dt>xlim</dt>
- <dd>
- plot range in x direction.
- </dd>
- <dt>xlab</dt>
- <dd>
- Label for the x axis. Defaults to "Time [days]".
-</dd>
- <dt>ylab</dt>
- <dd>
- Label for the y axis. Defaults to "Residual [% of applied radioactivity]".
-</dd>
- <dt>maxabs</dt>
- <dd>
- Maximum absolute value of the residuals. This is used for the scaling of
- the y axis and defaults to "auto".
-</dd>
- <dt>legend</dt>
- <dd>
- Should a legend be plotted? Defaults to "TRUE".
-</dd>
- <dt>lpos</dt>
- <dd>
- Where should the legend be placed? Default is "topright". Will be passed on to
- <code><a href='http://www.inside-r.org/r-doc/graphics/legend'>legend</a></code>. </dd>
- <dt>...</dt>
- <dd>
- further arguments passed to <code><a href='http://www.inside-r.org/r-doc/graphics/plot'>plot</a></code>.
-</dd>
- </dl>
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>This function plots the residuals for the specified subset of the
- observed variables from an mkinfit object. A combined plot of the fitted
- model and the residuals can be obtained using <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code>
- using the argument <code>show_residuals = TRUE</code>.</p>
-
- </div>
-
- <div class="Value">
- <h2>Value</h2>
-
- <p><dl>
- Nothing is returned by this function, as it is called for its side effect, namely to produce a plot.
-</dl></p>
-
- </div>
-
- <h2 id="examples">Examples</h2>
- <pre class="examples"><div class='input'>model &lt;- mkinmod(parent = mkinsub(&quot;SFO&quot;, &quot;m1&quot;), m1 = mkinsub(&quot;SFO&quot;))
-</div>
-<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong>
-<div class='input'>fit &lt;- mkinfit(model, FOCUS_2006_D, quiet = TRUE)
-mkinresplot(fit, &quot;m1&quot;)
-</div>
-<p><img src='mkinresplot-4.png' alt='' width='540' height='400' /></p></pre>
- </div>
- <div class="span4">
- <!-- <ul>
- <li>mkinresplot</li>
- </ul>
- <ul>
- <li> hplot </li>
- </ul> -->
-
- <h2>See also</h2>
-
- <code><a href='mkinplot.html'>mkinplot</a></code>, for a way to plot the data and the fitted lines of the
- mkinfit object.
-
- <h2>Author</h2>
-
- Johannes Ranke
-
-
- </div>
-</div>
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