aboutsummaryrefslogtreecommitdiff
path: root/inst/web/schaefer07_complex_case.html
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2015-11-09 09:05:15 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2015-11-09 09:05:15 +0100
commit3151647526f299686b68420a83ae38cd7f3d08f5 (patch)
treec061b5a23ac6cc5644c6851012105b185715ef5e /inst/web/schaefer07_complex_case.html
parent415ca2bea5d5c3815bd9f8fa1566cec5bb3fc775 (diff)
Rebuild vignettes and static documentation
Diffstat (limited to 'inst/web/schaefer07_complex_case.html')
-rw-r--r--inst/web/schaefer07_complex_case.html132
1 files changed, 132 insertions, 0 deletions
diff --git a/inst/web/schaefer07_complex_case.html b/inst/web/schaefer07_complex_case.html
new file mode 100644
index 00000000..403e7229
--- /dev/null
+++ b/inst/web/schaefer07_complex_case.html
@@ -0,0 +1,132 @@
+<!DOCTYPE html>
+<html lang="en">
+ <head>
+ <meta charset="utf-8">
+<title>schaefer07_complex_case. mkin 0.9-41</title>
+<meta name="viewport" content="width=device-width, initial-scale=1.0">
+<meta name="author" content="">
+
+<link href="css/bootstrap.css" rel="stylesheet">
+<link href="css/bootstrap-responsive.css" rel="stylesheet">
+<link href="css/highlight.css" rel="stylesheet">
+<link href="css/staticdocs.css" rel="stylesheet">
+
+<!--[if lt IE 9]>
+ <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
+<![endif]-->
+
+<script type="text/x-mathjax-config">
+ MathJax.Hub.Config({
+ tex2jax: {
+ inlineMath: [ ['$','$'], ["\\(","\\)"] ],
+ processEscapes: true
+ }
+ });
+</script>
+<script type="text/javascript"
+ src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
+</script>
+ </head>
+
+ <body>
+ <div class="navbar">
+ <div class="navbar-inner">
+ <div class="container">
+ <a class="brand" href="#">mkin 0.9-41</a>
+ <div class="nav">
+ <ul class="nav">
+ <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
+ </ul>
+ </div>
+ </div>
+ </div>
+</div>
+
+ <div class="container">
+ <header>
+
+ </header>
+
+ <h1>
+ Metabolism data set used for checking the software quality of KinGUI
+</h1>
+
+<div class="row">
+ <div class="span8">
+ <h2>Usage</h2>
+ <pre><div>data(schaefer07_complex_case)</div></pre>
+
+ <div class="Description">
+ <h2>Description</h2>
+
+ <p>This dataset was used for a comparison of KinGUI and ModelMaker to check the
+ software quality of KinGUI in the original publication (Schäfer et al., 2007).
+ The results from the fitting are also included.</p>
+
+ </div>
+
+ <div class="Format">
+ <h2>Format</h2>
+
+ <p>The data set is a data frame with 8 observations on the following 6 variables.
+ <dl>
+ <dt><code>time</code></dt><dd>a numeric vector</dd></p>
+
+ <p><dt><code>parent</code></dt><dd>a numeric vector</dd></p>
+
+ <p><dt><code>A1</code></dt><dd>a numeric vector</dd></p>
+
+ <p><dt><code>B1</code></dt><dd>a numeric vector</dd></p>
+
+ <p><dt><code>C1</code></dt><dd>a numeric vector</dd></p>
+
+ <p><dt><code>A2</code></dt><dd>a numeric vector</dd></p>
+
+ <p></dl></p>
+
+ <p>The results are a data frame with 14 results for different parameter values</p>
+
+ </div>
+
+ <div class="References">
+ <h2>References</h2>
+
+ <p>Schäfer D, Mikolasch B, Rainbird P and Harvey B (2007). KinGUI: a new kinetic
+ software tool for evaluations according to FOCUS degradation kinetics. In: Del
+ Re AAM, Capri E, Fragoulis G and Trevisan M (Eds.). Proceedings of the XIII
+ Symposium Pesticide Chemistry, Piacenza, 2007, p. 916-923.</p>
+
+ </div>
+
+ <h2 id="examples">Examples</h2>
+ <pre class="examples"><div class='input'>data &lt;- mkin_wide_to_long(schaefer07_complex_case, time = &quot;time&quot;)
+model &lt;- mkinmod(
+ parent = list(type = &quot;SFO&quot;, to = c(&quot;A1&quot;, &quot;B1&quot;, &quot;C1&quot;), sink = FALSE),
+ A1 = list(type = &quot;SFO&quot;, to = &quot;A2&quot;),
+ B1 = list(type = &quot;SFO&quot;),
+ C1 = list(type = &quot;SFO&quot;),
+ A2 = list(type = &quot;SFO&quot;), use_of_ff = &quot;max&quot;)
+</div>
+<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong>
+<div class='input'>## Not run: mkinfit(model, data, plot=TRUE)
+</div></pre>
+ </div>
+ <div class="span4">
+ <!-- <ul>
+ <li>schaefer07_complex_case</li><li>schaefer07_complex_results</li>
+ </ul>
+ <ul>
+ <li>datasets</li>
+ </ul> -->
+
+
+ </div>
+</div>
+
+ <footer>
+ <p class="pull-right"><a href="#">Back to top</a></p>
+<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
+ </footer>
+ </div>
+ </body>
+</html> \ No newline at end of file

Contact - Imprint