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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-26 14:13:09 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-26 14:13:09 +0200
commit0e9220c6b9132602a3d69e4be582a02da8b07822 (patch)
tree327aed436a0bfc4df33e42f55fb2d56b04785a85 /log
parentc615bd685d6a109306e68ea7b0516ba3d6805114 (diff)
Really test anova output, test covariates
Diffstat (limited to 'log')
-rw-r--r--log/test.log22
1 files changed, 11 insertions, 11 deletions
diff --git a/log/test.log b/log/test.log
index d9dcffb9..6f6d0f23 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,11 +1,11 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.3s]
+✔ | 5 | Analytical solutions for coupled models [3.2s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [32.1s]
+✔ | 1 12 | Dimethenamid data from 2018 [31.8s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
@@ -16,7 +16,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.2s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.6s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits
@@ -26,18 +26,18 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 10 | Special cases of mkinfit calls [0.4s]
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
-✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 5 | Multistart method for saem.mmkin models [34.8s]
+✔ | 3 | Model predictions with mkinpredict [0.4s]
+✔ | 7 | Multistart method for saem.mmkin models [36.0s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.3s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s]
✔ | 16 | Plotting [10.0s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 35 | saemix parent models [65.3s]
+✔ | 1 36 | saemix parent models [71.5s]
────────────────────────────────────────────────────────────────────────────────
-Skip (test_saemix_parent.R:142:3): We can also use mkin solution methods for saem
+Skip (test_saemix_parent.R:152:3): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
────────────────────────────────────────────────────────────────────────────────
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
✔ | 11 | Processing of residue series
✔ | 7 | Fitting the SFORB model [3.7s]
✔ | 1 | Summaries of old mkinfit objects
@@ -47,11 +47,11 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 198.3 s
+Duration: 206.0 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)
• This still takes almost 2.5 minutes although we do not solve ODEs (1)
-[ FAIL 0 | WARN 0 | SKIP 3 | PASS 258 ]
+[ FAIL 0 | WARN 0 | SKIP 3 | PASS 261 ]

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