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authorJohannes Ranke <jranke@uni-bremen.de>2022-08-08 10:11:04 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-08-08 10:11:04 +0200
commit22d21cf5efcfb52c59c969d393bb0be077e982dd (patch)
treec8d97e7fff25d42019bb5a5908a5ce228cac6fb5 /log
parent546c540fecb60b51c3e265911282881315a8c937 (diff)
Fix fitting HS with saemix transformations
Diffstat (limited to 'log')
-rw-r--r--log/test.log22
1 files changed, 10 insertions, 12 deletions
diff --git a/log/test.log b/log/test.log
index 266a566f..776b6f49 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,13 +1,11 @@
-ℹ Loading mkin
-Loading required package: parallel
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.2s]
+✔ | 5 | Analytical solutions for coupled models [3.3s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [31.6s]
+✔ | 1 12 | Dimethenamid data from 2018 [32.0s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
@@ -16,7 +14,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
-✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
+✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
✔ | 1 | Fitting the logistic model [0.2s]
✔ | 1 12 | Nonlinear mixed-effects models [0.2s]
────────────────────────────────────────────────────────────────────────────────
@@ -28,13 +26,13 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
✔ | 3 | Model predictions with mkinpredict [0.4s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [8.3s]
-✔ | 16 | Plotting [10.6s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [9.1s]
+✔ | 16 | Plotting [10.7s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 25 | saemix parent models [172.9s]
+✔ | 27 | saemix parent models [178.6s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
-✔ | 7 | Fitting the SFORB model [3.7s]
+✔ | 7 | Fitting the SFORB model [3.6s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
@@ -42,10 +40,10 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 255.9 s
+Duration: 263.0 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)
-[ FAIL 0 | WARN 0 | SKIP 2 | PASS 225 ]
+[ FAIL 0 | WARN 0 | SKIP 2 | PASS 227 ]

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